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YING BEIWEN

Affiliation
Faculty of Life and Environmental Sciences
Official title
Associate Professor
Sex
Female
URL
Phone
029-853-6633
Fax
029-853-6633
Research fields
System genome science
Evolutionary biology
Applied microbiology
Computational science
Life / Health / Medical informatics
Molecular biology
Research keywords
Bacterial growth
Genome reduction
Experimental evolution
Gene expression
Machine learning
Bioinformatics
Research projects
人工的遺伝子回路の発現レベルの予測モデルの構築2014 -- 2015YING BEIWENJapan Society for the Promotion of Science/新学術領域研究(研究領域提案型)4,420,000Yen
極限貧栄養環境下で増殖する細胞の創出2014 -- 2016YING BEIWENJapan Society for the Promotion of Science/基盤研究(C)5,070,000Yen
大腸菌の確率的環境適応応答の解析2014-04 -- 2015-03イン ベイウェン科学技術振興機構(JST)/共同研究
細胞増殖に伴う集団秩序の維持2013-04 -- 2015-03YING BEIWENJapan Society of for the Promotion of Science/Grant-in-Aid for Scientific Research on Innovative Areas
大腸菌ゲノム高温適応進化機構の解明2011-04 -- 2014-03YOMO TetsuyaJapan Society of for the Promotion of Science/Grant-in-Aid for Scientific Research (A)
単細胞を用いた細胞分化の恒常性モデルの構築2010-04 -- 2012-03YING BEIWENJapan Society of for the Promotion of Science/Grant-in-Aid for Exploratory Research
実験室内進化させた耐熱大腸菌に対するゲノムワイド解析2010-04 -- 2011-03YING BEIWEN財団法人発酵研究所/平成22年度 一般研究助成
Career history
2013 -- (current)University of Tsukuba Associate Professor
2007 -- 2013Osaka University Assistant Professor, Associate Professor
2006 -- 2007Centre national de la recherche scientifique (CNRS) Postdoc
2005 -- 2006The University of Tokyo Research Fellow
Academic background
2000 -- 2005The University of Tokyo Graduate School of Integrative SciencesCompleted
Degree
2005-03PhD. (Biosciences)The University of Tokyo
Academic societies
-- (current)American Society for Microbiolgy
-- (current)Society of Genome Microbiolgy, Japan
-- (current)The Molecular Biology Society of Japan
-- (current)JAPANESE SOCIETY OF MICROBICAL ECOLOGY
Articles
Books
  • Comparative analyses of bacterial transcriptome reorganisation in response to temperature increase.
    YING BEIWEN; YOMO Tetsuya
    Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria, 2016-05
  • Built-in synthetic gene circuits in Escherichia coli – methodology and applications.
    YING BEIWEN; YOMO Tetsuya
    Advances in Applied Biotechnology, 2012-01
  • Protein generation using a reconstituted system.
    YING BEIWEN; UEDA Takuya
    Protein Engineering Handbook, 2009-01
  • The PURE system: a minimal cell-free translation system.
    YING BEIWEN; SHIMIZU Yoshihiro; UEDA Takuya
    Cell-Free Expression, 2007-12
Conference, etc.
  • A challenge of predicting the contribution of chemicals to bacterial growth by machine learning
    YING BEIWEN; 芦野一葉; 菅野健太; 天笠俊之
    日本分子生物学会第41回大会/2018-11-28--2018-11-30
  • 大腸菌における非必須遺伝子と増殖速度の関係
    劉柳; YING BEIWEN
    日本ゲノム微生物学会第12回大会/2018-03-05--2018-03-07
  • ゲノム縮小と大腸菌増殖の相関
    黒川真臣; YING BEIWEN
    日本ゲノム微生物学会第12回大会/2018-03-05--2018-03-07
  • ヒスチジン枯渇環境に適応した大腸菌に対する解析
    日原奨希; YING BEIWEN
    日本ゲノム微生物学会第12回大会/2018-03-05--2018-03-07
  • 大腸菌広域欠失株の増殖に対する数理的評価
    黒川真臣; YING BEIWEN
    日本ゲノム微生物学会第10回大会/2016-03-04
  • ヒスチジン枯渇を長期間経験したヒスチジン要求性大腸菌株に対する解析
    日原奨希; YING BEIWEN
    日本ゲノム微生物学会第11回大会/2017-03-02--2017-03-04
  • 大腸菌ゲノム縮小株の増殖に対する研究
    黒川真臣; YING BEIWEN
    日本ゲノム微生物学会第11回大会/2017-03-02--2017-03-04
  • 大腸菌ゲノム縮小における増殖速度と変異率の相関
    YING BEIWEN
    日本ゲノム微生物学会第11回大会/2017-03-02--2017-03-04
  • Connecting bacterial growth with genome and transcriptome.
    YING BEIWEN
    International workshop on "Integration of Synthetic Biology and Systems Biology of Microbes"/2016-03-17
  • An evolutionary trade-off between growth and sustainability accompanied by ribosomal damages
    YING BEIWEN
    日本ゲノム微生物学会第10回大会/2016-03-04
  • 実験室内進化から見えた大腸菌の生き残り戦略
    YING BEIWEN
    日本バイオインフォマティクス学会・平成27年度生命システム理論研究会/2015-11-27
  • 実験室内極限生物の創出
    YING BEIWEN
    日本宇宙生物科学会第28回大会/2014-09-22
  • Long-term repeated starvation-resuscitation triggers an evolutionary trade-off between growth rate and resource utilization
    YING BEIWEN
    日本進化学会第16回大会/2014-08-21
  • 繰り返し栄養枯渇に対する適応:進化 or 退化?
    YING BEIWEN
    日本進化学会第15回大会/2013-08-28
  • 飢餓と蘇生の繰り返しを乗り越えた大腸菌
    YING BEIWEN
    日本ゲノム微生物学会第7 回大会/2013-03-08
  • 疑似進化による新規的表現型の獲得
    YING BEIWEN
    日本分子生物学会第35回大会/2012-12-08
  • Disturbing native regulations by a synthetic promoter reduced the noise in gene expression.
    YING BEIWEN
    Cold Spring Harbor Asia Conferences: Synthetic Biology/2012-11-10
  • Reduced noise in gene expression caused by a replaced foreign promoter.
    YING BEIWEN
    日本進化学会第14回大会/2012-08-28
  • Genomic and environmental contributions to bacterial transcriptome.
    YING BEIWEN
    日本ゲノム微生物学会第6回大会/2012-03-08
  • Reduction in genome size decreased fluctuation in gene expression.
    YING BEIWEN
    日本分子生物学会第34回大会/2011-12-08
  • Synthetic proto-operons for stochastic adaptation.
    YING BEIWEN
    The 17th International Biophysics Conference/2011-11-10
  • 大腸菌を用いた細胞サイズの実験室内進化
    YING BEIWEN
    日本進化学会第13回大会/2011-07-28
  • Genome-wide mutation and transcriptional reorganization in the thermal adaptive Escherichia coli from laboratory evolution.
    YING BEIWEN
    日本分子生物学会第33回大会・日本生化学会第83回大会/2010-12-08
  • Thermo-tolerant evolution of Escherichia coli.
    YING BEIWEN
    「細胞を創る」研究会4.0/2010-10-26
  • 大腸菌の高温への適応進化
    YING BEIWEN
    日本進化学会第13回大会/2010-08-30
Intellectural property rights
  • 培養環境判定装置、培養環境判定方法、及びプログラム
    YING BEIWEN; Amagasa Toshiyuki
  • リボソームディスプレイ
    UEDA Takuya; OHASHI Hiroyuki; SHIMIZU Yoshihiro; YING BEI...
Teaching
2018-10 -- 2019-02Advanced Research in Integrative Environment and Biomass Sciences IUniversity of Tsukuba.
2018-10 -- 2019-02Advanced Research in Integrative Environment and Biomass Sciences IIUniversity of Tsukuba.
2018-04 -- 2018-08Advanced Research in Integrative Environment and Biomass Sciences IUniversity of Tsukuba.
2018-04 -- 2018-08Advanced Research in Integrative Environment and Biomass Sciences IIUniversity of Tsukuba.
2018-10 -- 2018-12English for Specialized Subjects IIUniversity of Tsukuba.
2018-10 -- 2018-11Lecture on Microbial BiotechnologyUniversity of Tsukuba.
2018-10 -- 2019-02Methodology on Environmental Molecular MicrobiologyUniversity of Tsukuba.
2018-07 -- 2018-08Lecture on Microbial BiotechnologyUniversity of Tsukuba.
2018-04 -- 2018-06Lecture on Environmental Molecular MicrobiologyUniversity of Tsukuba.
2018-04 -- 2018-08Methodology on Environmental Molecular MicrobiologyUniversity of Tsukuba.
Other educational activities
2017-04 -- 2017-04キャリアデザインワークショップ東京大学
Talks
  • Experimental evolution with laboratory E. coli strains
    YING BEIWEN
    華東理工大学 セミナー/2017-03-20
  • Stochastic Adaptation and Thermal Adaptive Evolution
    YING BEIWEN
    中国農業大学 セミナー/2011-11-01
  • 実験室内進化からみた大腸菌の高温適応進化
    YING BEIWEN
    「酵母リソース工学」開設式・記念講演会/2011-11-29
Professional activities
2019 -- (current)Scientific Reports (Nature Publishing Group)Editorial Board Member
2015 -- (current)Society of Genome Microbiolgy, JapanCouncilor
University Management
2017-04 -- (current)ダイバーシティ・アクセシビリティ(専攻)
2015-04 -- (current)学生支援(専攻)委員

(Last updated: 2019-05-21)