YE Xiucai

Affiliation
Institute of Systems and Information Engineering
Official title
Associate Professor
ORCID
0000-0002-5547-3919
Email
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Office
Mathematical Modeling & Algorithms
Research fields
Mathematical informatics
Research keywords
Feature Selection, Dimensionality Reduction, Clustering, Machine Learning, Data Analysis, Bioinformatics, Network Computing
Research projects
Advanced Biomarker Discovery for Early Alzheimer's Disease Identification: A Taiwan-Japan Collaborative Initiative2025-04 -- 2026-03Xiucai YeNTU-UGA-UT joint initiatives in research and education/研究・教育共同イニシアティブ800,000Yen
Distributed cooperative feature selection based on data collaboration analysis2022-04 -- 2026-03Xiucai YEJapan Society for the Promotion of Science/Grant-in-Aid for Scientific Research(C)4,160,000Yen
Career history
2024-01 -- (current)University of TsukubaFaculty of Engineering,Information and SystemsAssociate Professor
2018-04 -- 2023-12University of TsukubaFaculty of Engineering,Information and SystemsAssistant Professor
2014-07 -- 2018-03University of TsukubaFaculty of Engineering,Information and SystemsPostdoctoral Researcher
2014-05 -- 2014-06University of TsukubaFaculty of Engineering,Information and SystemsPostdoctoral Researcher
Academic background
2010-04 -- 2014-03University of Tsukuba Graduate School of Systems and Information Engnieering Department of Computer Science
Degree
2014-03ph.D. (Engineering)University of Tsukuba
Academic societies
2018-12 -- (current)AAAI
2017-04 -- (current)CBEES
2014-01 -- (current)IEEE
Honors & Awards
2024-09令和5年度 筑波大学若手教員奨励賞
2023-04令和4年度システム情報系教育貢献賞
2019-05International Conference ICMHI Excellent Oral Presentation Award
2018-10IEEE International Conference CBDCom Best Paper Award
2017-05International Conference ICMHI Best Paper Award
2017-02International Conference ICMLC Excellent Oral Presentation Award
2016-02International Conference ICMLC Excellent Oral Presentation Award
Articles
Conference, etc.
  • Clinically-Guided Multi-Omics Clustering for Cancer Subtype Identification
    Shi Tianyi; Ye Xiucai; Sakurai Tetsuya
    International Conference on Machine Learning and Computing (ICMLC)/2026-02-06--2026-02-09
  • Contrastive Fusion of Biomolecular and Heterogeneous Network Features for Drug-Target Interaction Prediction
    Ye Xiucai; Yang Hongyang; Sakurai Tetsuya
    International Conference on Machine Learning and Computing (ICMLC)/2026-02-06--2026-02-09
  • PLM-Driven Differentiable Clustering and Graph Reasoning for Protein Interaction Site Prediction
    Xi Wenyu; Ye Xiucai; Shi Tianyi; Sakurai Tetsuya
    International Conference on Machine Learning and Computing (ICMLC)/2026-02-06--2026-02-09
  • Large Language Model-Guided Feature Extraction for Multi-Omics Clustering in Cancer Subtyping
    Shi Tianyi; Ye Xiucai; Sakurai Tetsuya
    International Conference on Robotics and Artificial Intelligence (ICRAI)/2025-12-19--2025-12-21
  • Noise-robustness analysis of hybrid quantum-classical CNNs for small-sample road image classification
    Long Changzhou; Ye Xiucai; Sakurai Tetsuya
    International Conference on Robotics and Artificial Intelligence (ICRAI)/2025-12-19--2025-12-21
  • Task-Aware Clustering for Subtype Discovery in Medical Data
    叶 秀彩; 櫻井鉄也
    The 7th University of Tsukuba Industry-Academia Collaboration Symposium/2025-10-17--2026-10-17
  • Applications of Artificial Intelligence to Enhance Drug Discovery
    Ye Xiucai
    Taiwan–Japan Biomedical Collaboration Symposium/2025-10-09--2025-10-09
  • STlinear: A linear denoising algorithm for spatial domain identification in spatial transcriptomics
    Cui Yaxuan; Cui Yang; Wang Ruheng; YE Xiucai; Sakurai...
    The 20th World Congress on Medical and Health Informatics (MedInfo 2025)/2025-08-09--2025-8-13
  • Deep Feature Learning for Multi-Omics Clustering Using Supervised Variational Autoencoders with Clinical Information
    Shi Tianyi; YE Xiucai; Sakurai Tetsuya
    International Joint Conference on Neural Networks (IJCNN2025)/2025-06-30--2025-7-5
  • A Capsule Network-Based Model for Predicting RNA-Small Molecule Binding Sites
    Xi Wenyu; YE Xiucai; Sakurai Tetsuya
    The 9th International Conference on Medical and Health Informatics (ICMHI 2025)/2025-05-16--2025-5-18
  • Multi-Omics Clustering with Large Language Model-Based Feature Extraction
    Shi Tianyi; YE Xiucai; Sakurai Tetsuya
    The 9th International Conference on Medical and Health Informatics (ICMHI 2025)/2025-05-16--2025-5-18
  • Improved Efficiency and Interpretability for Peptide Prediction Based on Kolmogorov–Arnold Networks and Multi-scale Features
    Wang Li; YE Xiucai; Sakurai Tetsuya
    The 9th International Conference on Medical and Health Informatics (ICMHI 2025)/2025-05-16--2025-5-18
  • A Memory Attention-Driven Framework with Biological Language Embedding for Predicting Protein-DNA Binding Residues
    Guan Shixuan; YE Xiucai; Sakurai Tetsuya
    The 9th International Conference on Medical and Health Informatics (ICMHI 2025)/2025-05-16--2025-5-18
  • Multi-omics Data Clustering for Cancer Subtyping via Interpretable Feature Extraction
    Shi Tianyi; Ye Xiucai; Sakurai Tetsuya
    International Conference on Machine Learning and Computing (ICMLC 2025)/2025-2-14--2025-2-17
  • Selecting interpretable features for cancer subtyping on multi-omics data
    Shi Tianyi; Ye Xiucai; Huang Dong; Sakurai Tetsuya
    IEEE International Conference on Bioinformatics and Biomedicine (BIBM)/2024-12-03--2024-12-06
  • CyclePermea: Membrane Permeability Prediction of Cyclic Peptides with a Multi-Loss Fusion Network
    Wang Zixu; Chen Yangyang; Ye Xiucai; Sakurai Tetsuya
    International Joint Conference on Neural Networks (IJCNN2024)/2024-06-30--2024-7-5
  • Deciphering the Complex Characterization of Coding LncRNA
    Liu Tianyuan; Ye Xiucai; Sakurai Tetsuya
    International Joint Conference on Neural Networks (IJCNN2024)/2024-06-30--2024-7-5
  • Multi-omics Clustering for Cancer Subtyping Based on SHAP Values
    Shi Tianyi; Ye Xiucai; Sakurai Tetsuya
    The 8th International Conference on Medical and Health Informatics (ICMHI 2024)/2024-05-17--2024-5-19
  • Opportunities and Challenges: A New Perspective in Functional Diversity of Coding LncRNA and Their Micropeptides
    Liu Tianyuan; Ye Xiucai; Sakurai Tetsuya
    The 8th International Conference on Medical and Health Informatics (ICMHI 2024)/2024-05-17--2024-5-19
  • Exploring Peptide Toxicity Prediction for Intelligent Drug Discovery Using Deep Learning
    Jiao Shihu; Ye Xiucai; Sakurai Tetsuya
    The 8th International Conference on Medical and Health Informatics (ICMHI 2024)/2024-05-17--2024-5-19
  • Hierarchical Deep Learning Architecture for Predicting Protein-DNA Binding Sites
    Guan Shixuan; Ye Xiucai; Sakurai Tetsuya
    The 8th International Conference on Medical and Health Informatics (ICMHI 2024)/2024-05-17--2024-5-19
  • Stgan: Imputation algorithm for spatial transcriptomics based on Generative Adversarial Network
    Cui Yaxuan; Ye Xiucai; Sakurai Tetsuya
    The 8th International Conference on Medical and Health Informatics (ICMHI 2024)/2024-05-17--2024-5-19
  • CPPM: Prediction of cyclic peptide membrane permeability based on multi-loss fusion network
    Chen Yangyang; Ye Xiucai; Sakurai Tetsuya
    The 8th International Conference on Medical and Health Informatics (ICMHI 2024)/2024-05-17--2024-5-19
  • Multi-omics clustering based on interpretable and discriminative features for cancer subtyping
    Shi Tianyi; Ye Xiucai; Sakurai Tetsuya
    IEEE International Conference on Bioinformatics and Biomedicine (BIBM)/2023-12-05--2023-12-08
  • Multi-view Network Embedding with Structure and Semantic Contrastive Learning
    Shang Yifan; Ye Xiucai; Sakurai Tetsuya
    IEEE International Conference on Multimedia and Expo (ICME2023)/2023-07-10--2023-07-14
  • more...
Intellectural property rights
  • Information processing method, information processing system, and recording medium
    TAMURA Jun; MORIYA Tsuyoshi; IMAKURA Akira; SAKURAI T...
  • 特徴量選択支援装置、特徴量選択支援プログラム及び特徴量選択支援方法
    今倉 暁; 叶 秀彩; 櫻井 鉄也
Teaching
2025-07 -- 2025-07Biomolecule and Medical InformaticsUniversity of Tsukuba.
2025-04 -- 2025-08Cross-Disciplinary Seminar in Computer ScienceUniversity of Tsukuba.
2025-04 -- 2025-08Research in Computer Science IsUniversity of Tsukuba.
2025-04 -- 2025-08Research in Computer Science IIsUniversity of Tsukuba.
2025-10 -- 2026-02Research in Computer Science IIfUniversity of Tsukuba.
2025-10 -- 2026-02Research in Computer Science IIUniversity of Tsukuba.
2025-04 -- 2025-08Research in Computer Science IIUniversity of Tsukuba.
2025-10 -- 2026-02Research in Computer Science IfUniversity of Tsukuba.
2025-10 -- 2026-02Research in Computer Science IUniversity of Tsukuba.
2025-04 -- 2025-08Research in Computer Science IUniversity of Tsukuba.
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Other educational activities
2019-07 -- 2019-07中高生理工系進学応援シンポジウム及びリケジョサイエンス合宿ダイバーシティ・アクセシビリティ・キャリアセンター
Professional activities
2025-11 -- 2026-10Frontiers in Chemistry Special Issue on Molecular Representation and Its Application in Drug DevelopmentTopic editor
2026-02 -- 2026-02The 18th International Conference on Machine Learning and Computing (ICMLC)Session Chair (Special Session 5: Machine Learning Applications in Bioinformatics)
2025-08 -- 2026-02The 18th International Conference on Machine Learning and Computing (ICMLC)Special Session Chair
2025-12 -- 2025-12The 11th International Conference on Robotics and Artificial Intelligence (ICRAI)Session Chair (Onsite Section 4: Image Processing and Computer Vision)
2025-06 -- 2025-12The 11th International Conference on Robotics and Artificial Intelligence (ICRAI)Program Chair
2025-06 -- 2026-02The 18th International Conference on Machine Learning and ComputingProgram Co-Chair
2025-05 -- 2025-05The 9th International Conference on Medical and Health InformaticsSession Chair (​Special Session: Deep Learning for Biomolecular Interaction and Multi-Omics Integration)
2025-02 -- 2025-02The 17th International Conference on Machine Learning and ComputingSession Chair (​ONSITE SESSION 1 ​Machine Learning Theory and Algorithms)
2024-06 -- 2025-02The 17th International Conference on Machine Learning and ComputingProgram Co-Chair
2024-03 -- 2024-12Future Generation Computer Systems Special Issue on Explainable Artificial Intelligence in Drug Discovery and DevelopmentGuest Editor
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University Management
2026-04 -- (current)情報理工学位プログラム 国費優先配置推進室室長
2025-04 -- (current)情報理工学位プログラム ダブルディグリープログラム（DDP）推進室室員
2025-04 -- (current)地球規模課題学位プログラム（学士）教育会議委員
2024-04 -- (current)情報科学類　世話人専門導入科目「情報科学概論」世話人
2025-04 -- (current)情報科学類 世話人ソフトウェアサイエンス　主専攻世話人
2024-04 -- (current)情報科学類、情報理工学位プログラム　国際交流委員会アドバイザー
2025-10 -- 2025-12ライフイノベーション学位プログラム 世話人「生体分子・創薬インフォマティクス」 世話人
2025-10 -- 2025-12ライフイノベーション学位プログラム 世話人「遺伝子解析と機能ゲノミクス」 世話人
2025-04 -- 2025-07ライフイノベーション学位プログラム 世話人「バイオインフォマティクス概論」 世話人
2024-04 -- 2025-03情報科学類　部局情報環境委員会委員
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(Last updated: 2026-05-09)