KUME Keitaro
- Affiliation
- Institute of Medicine
- Official title
- Assistant Professor
- Research fields
Parasitology (including sanitary zoology) Life / Health / Medical informatics Molecular biology - Research keywords
Artificial Intelligence Mitochondrion-related organelles Medical Database Molecular evolution Bioinformatics Machine Learning - Research projects
真核生物における嫌気的ATP合成経路の多様性と進化 2022-04 -- 2025-03 HASHIMOTO Tetsuo Japan Society for the Promotion of Science(JSPS)/Grant-in-Aid for Scientific Research(C) 4,030,000Yen Development of a deep learning model to predict diverse mitochondrial targeting signals in parasites 2023-04 -- 2026-03 KUME Keitaro Japan Society for the Promotion of Science(JSPS)/Grant-in-Aid for Early-Career Scientists 4,680,000Yen フォルニカータ生物群におけるミトコンドリア関連オルガネラの機能進化の解明 2019 -- 2023 HASHIMOTO Tetsuo Japan Society for the Promotion of Science/Fund for the Promotion of Joint International Research (Fostering Joint International Research (B)) 18,330,000Yen Developing a method for resolving bottleneck in analyses of national databases 2019-08 -- 2021-03 KUME Keitaro Japan Society for the Promotion of Science/Grant-in-Aid for Research Activity Start-up 2,860,000Yen - Academic background
2015-04 -- 2017-03 筑波大学 システム情報工学研究科 コンピュータサイエンス専攻 2013-04 -- 2019-03 筑波大学 生命環境科学研究科 生物科学専攻 - Degree
2015-03 修士(理学) University of Tsukuba 2017-03 修士(工学) University of Tsukuba 2019-03 博士(理学) University of Tsukuba - Academic societies
2013-08 -- (current) SOCIETY OF EVOLUTIONARY STUDIES, JAPAN 2013-12 -- (current) THE JAPANESE SOCIETY OF PARASITOLOGY 2016-07 -- (current) Information Processing Society of Japan - Articles
- Risk of postoperative pneumonia after extubation with the positive pressure versus normal pressure technique: a single-center retrospective observational study
Shimada Kensuke; Gosho Masahiko; Ohigashi Tomohiro; Ku...
Journal of anesthesia/Epub, 2024-09-12 - Toward a Patient-Centered Care Supporting System: Integration of Multidisciplinary Health Records in Breast Cancer Care
Sugiyama Atsuko; Utsunomiya Kazuki; Okumiya Hayato; Fu...
Studies in health technology and informatics/316/pp.1719-1723, 2024-08-22 - Integrated Electronic Health Record of Multidisciplinary Professionals Throughout the Cancer Care Pathway: A Pilot Study Exploring Patient-Centered Information in Breast Cancer Patients
Sugiyama Atsuko; Okumiya Hayato; Fujimoto Katsuhiko; U...
JOURNAL OF MULTIDISCIPLINARY HEALTHCARE/17/pp.2069-2081, 2024-04-01 - Integrated Electronic Health Record of Multidisciplinary Professionals Throughout the Cancer Care Pathway: A Pilot Study Exploring Patient-Centered Information in Breast Cancer Patients
Sugiyama Atsuko; Okumiya Hayato; Fujimoto Katsuhiko; U...
SSRN, 2023-11 - Transcriptome data sets of free-living diplomonads, Treponema sp, and Hexamita sp.
Kume Keitaro; Tsubasa Gen; Kazuki Abe; Hiroshi Komats...
MICROBIOLOGY RESOURCE ANNOUNCEMENTS/12(11)/pp.e0050623-e0050623, 2023-11 - Hospital-level Variation of the Cardiac Rehabilitation after Myocardial Infarction in Japan during Fiscal Years 2014–2015 using the National Database
Jun Komiyama; Takehiro Sugiyama; Masao Iwagami; Miho ...
Circulation reports, 2023-04 - Association between types of home healthcare and emergency house calls, hospitalization, and end-of-life care in Japan
Sun Yu; Iwagami Masao; Komiyama Jun; Sugiyama Takehiro; I...
JOURNAL OF THE AMERICAN GERIATRICS SOCIETY/71(6)/pp.1795-1805, 2023-02-15 - The Effect of Home Care Support Clinics on Hospital Readmission in Heart Failure Patients in Japan
Sun Yu; Iwagami Masao; Komiyama Jun; Sugiyama Takehiro; I...
JOURNAL OF GENERAL INTERNAL MEDICINE/38(9)/pp.2156-2163, 2023-01-17 - AtLASS: A scheme for end-to-end prediction of splice sites using attention-based bi-LSTM.
Harada Ryo; Kume Keitaro; Horie Kazumasa; Nakayama Takur...
IPSJ Transactions on Bioinformatics/16/pp.20-27, 2023-07 - Draft genome sequence of Aduncisulcus paluster, a free-living microaerophilic eukaryote belonging to Fornicata.
Ikuko Yuyama; Kume Keitaro; Tamura Takumi; Inagaki Yu...
MICROBIOLOGY RESOURCE ANNOUNCEMENTS/12(2)/p.e0053922, 2023-02 - Genome evolution of a nonparasitic secondary heterotroph, the diatom Nitzschia putrida
Kamikawa Ryoma; Mochizuki Takako; Sakamoto Mika; Tanizawa...
SCIENCE ADVANCES/8(17), 2022-04-29 - Medical expenditures for fragility hip fracture in Japan: a study using the nationwide health insurance claims database
Mori Takahiro; Komiyama Jun; Fujii Tomoko; Sanuki Mas...
Archives of osteoporosis/17(1)/p.61, 2022-04-11 - The closest relative of Archaeplastida is revealed by phylogenomic analyses that include Microheliella maris.
Yazaki Euki; Yabuki Akinori; Imaizumi Ayaka; Kume Keitar...
OPEN BIOLOGY/12(4)/p.210376, 2022-04 - Progress in understanding the phylogeny of the Plasmodium vivax lineage
Arisue Nobuko; Honma Hajime; Kume Keitaro; Hashimoto ...
PARASITOLOGY INTERNATIONAL/87, 2022-04 - Phylogenomics invokes the clade housing Cryptista, Archaeplastida, and Microheliella maris.
Yazaki Euki; Yabuki Akinori; Imaizumi Ayaka; Kume Keitar...
bioRχiv, 2021-08 - Barthelonids represent a deep-branching metamonad clade with mitochondrion-related organelles predicted to generate no ATP
Euki Yazaki; Kume Keitaro; Takashi Shiratori; Yana Eglit...
Proceedings of the Royal Society B/287(1934)/p.20201538, 2020-09 - Barthelonids represent a deep-branching Matamonada clade with mitochondrion-related organelles generating no ATP.
Euki Yazaki; Kume Keitaro; Takashi Shiratori; Yana Edlit...
bioRχiv, 2019-10 - Mitochondrial genomes of Hemiarma marina and Leucocryptos marina revised the evolution of cytochrome c maturation in Cryptista.
Yuki Nishimura; Keitaro Kume; Keito Sonehara; Goro Tanif...
Frontiers in Ecology and Evolution/8/p.140, 2020-05 - Apicoplast phylogeny reveals the position of Plasmodium vivax basal to the Asian primate malaria parasite clade
Arisue Nobuko; Hashimoto Tetsuo; Kawai Satoru; Honma ...
Scientific Reports/9(1)/p.7274, 2019-05 - NommPred: Prediction of Mitochondrial and Mitochondrion-Related Organelle Proteins of Nonmodel Organisms
Kume Keitaro; Amagasa Toshiyuki; Hashimoto Tetsuo; Kitaga...
EVOLUTIONARY BIOINFORMATICS/14, 2018-12 - The draft genome of Kipferlia bialata reveals reductive genome evolution in fornicate parasites.
Tanifuji Goro; Takabayashi Shun; Kume Keitaro; Takagi Mi...
PLOS ONE/13(3)/p.e0194487, 2018-03 - Global Kinetoplastea phylogeny inferred from a large-scale multigene alignment including prarasitic species for better understanding transitions from a free-living to a parasitic lifestyle.
Yazaki Euki; Ishikawa Sohta; Kume Keitaro; Kumagai Akira...
Genes & Genetic Systems/92(1)/pp.35-42, 2017-9 - Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes.
Leger Michelle M; Kolisko Martin; Kamikawa Ryoma; Stairs ...
Nature Ecology & Evolution/1(4)/p.0092, 2017-02 - Palpitomonas bilix represents a basal cryptist lineage: Insight into the character evolution in Cryptista
Yabuki Akinori; Kamikawa Ryoma; Ishikawa Sota; Kolisko M...
Scientifc Reports/4/p.4641, 2014-04
- Risk of postoperative pneumonia after extubation with the positive pressure versus normal pressure technique: a single-center retrospective observational study
- Conference, etc.
- 寄生虫化に伴うディプロモナス類の遺伝子レパートリーの変化.
久米 慶太郎; 若島 朋幸; 厳 翼; 岩本 亮介; 井上 貴史; 谷藤 吾朗; 神川 龍馬; 稲垣...
日本共生生物学会第8回大会/2024-10-19--2024-10-20 - Association between types of home healthcare and emergency house calls, hospitalization, and end of-life care: A nationwide study in Japan
孫 瑜; 岩上 将夫; 小宮山 潤; 杉山 雄大; 井口 竜太; 佐方 信夫; 伊藤 智子; 吉江 悟; 松井...
WONCA Sydney World Conference/2023-10-26--2023-10-29 - Toward a Patient-Centered Care Supporting System: Integration of Multidisciplinary Health Records in Breast Cancer Care
Sugiyama Atsuko; Utsunomiya Kazuki; Okumiya Hayato; Fu...
34th Medical Informatics Europe Conference (MIE2024)/2024-08-25--2024-08-29 - Giardia intestinalis とその自由生活性近縁種におけるAcetyl-CoA Synthetase (ACS) の比較解析
小金丸 利隆; 田村 嘉孝; 星 康貴; 久米 慶太郎; 橋本 哲男; 奈良 武司
The 93rd Annual Meeting of the Japanese Society of Parasitology/2024-03-09--2024-03-10 - Transition of the gene repertoire with adaptation to parasitic lifestyle in Diplomonads: orthology analysis with related free-living species
久米 慶太郎; 若島 朋幸; 厳 翼; 岩本 亮介; 井上 貴史; 谷藤 吾朗; 神川 龍馬; 稲垣...
The 93rd Annual Meeting of the Japanese Society of Parasitology/2024-03-09--2024-03-10 - AtLASS: A Scheme for end-to-end prediction of splice sites using attention-based bi-LSTM.
原田亮; 久米慶太郎; 堀江和正; 中山卓郎; 稲垣 祐司; 天笠俊之
第74回バイオ情報学(SIGBIO)研究会/2023-06-29--2023-07-01 - 全国レセプトデータを用いた在宅療養支援診療所の心不全再入院に対する予防効果の検討
孫 瑜; 岩上将夫; 小宮山潤; 杉山雄大; 井口竜太; 佐方信夫; 伊藤智子; 吉江悟; 讃岐勝; 久米慶太郎; 松居宏樹; 植嶋大...
第81回日本公衆衛生学会総会/2022-10-07--2022-10-09 - Search for free-living-related proteins in free-living diplomonads that transitioned from a parasitic ancestor
厳翼; 久米慶太郎; 阿部一貴; 矢﨑裕規; 小松崎洋志; 谷藤吾朗; 神川龍馬; 稲垣 祐司; 橋本哲男
第92回寄生虫学会大会/2023/03/30--2023/03/31 - 全国レセプトデータを用いた在宅療養支援診療所の心不全再入院に対する予防
孫瑜; 岩上 将夫; 小宮山潤; 杉山 雄大; 井口 竜太; 佐方信夫; 伊藤智子; 吉江悟; 讃岐勝; 久米慶太郎; 松居宏樹; 植...
第81回日本公衆衛生学会/2022-10-7--2022-10-9 - Microheriella maris units Archaeplastida and Cryptista in phylogenomics.
Euki Yazaki; Akinori Yabuki; Ayaka Imaizumi; Keitaro Kum...
Asian Congress of Protistology IV/2021-11-19--2021-11-21 - エンドヘレア太陽虫Microheliella marisの系統的位置とミトコンドリアゲノム.
矢吹彬憲; 矢﨑裕規; 今泉彩香; 白鳥峻志; 久米慶太郎; 橋本哲男; 稲垣 祐司
日本藻類学会第44回大会/2020-03-26--2020-03-28 - 有孔虫Ammonia beccariiのミトコンドリアに局在するDNA分子群.
石谷佳之; 久米慶太郎; 稲垣 祐司
第3回日本共生生物学会/2019-11-19--2019-11-20 - フィロジェノミック解析により推測されたMicroheliella marisの系統的位置.
矢﨑裕規; 今泉彩香; 久米慶太郎; 白鳥峻志; 橋本哲男; 矢吹彬憲; 石田健一郎; 稲垣 祐司
第3回日本共生学会大会/2019-11-19--2019-11-20 - Mitochondrial genome of strain SRT308: insights into structure and gene content fo the ancestral euglenozoan mitochondrial genome.
Yazaki Euki; Shiratori Takashi; Kume Keitaro; Hashimoto ...
ISEP XXII/2018-05-27--2018-06-01 - ユーグレノゾア基部から分岐する新奇原生生物のミトコンドリアゲノム.
矢崎裕規; 白鳥峻志; 久米慶太郎; 橋本哲男; 石田健一郎; Inagaki Yuji
第50回日本原生生物学会・第1回日本共生生物学会合同大会/2017-11-17--2017-11-19 - A heterolobosean strain SRT213 and its mitochondrion-related organelle.
Yazaki Euki; Shiratori Takashi; Kume Keitaro; Hashimoto ...
ICOP2017/2017-07-31--2017-08-04 - 機械学習を用いた非モデル生物におけるミトコンドリア及び関連オルガネラタンパク質の予測手法
久米慶太郎; 天笠俊之; 橋本 哲男; 北川 博之
情報処理学会研究報告バイオ情報学研究会/2016-06 - The draft genome of Kipferlia bialata reveals that the gain of function contributes the massive reductive evolution in Metamonada.
Goro Tanifuji; Sun Takabayashi; Keitaro Kume; Mizue Taka...
Protis-2016 Moscow Forum/2016-06-06--2016-06-10 - フォルニカータ生物群の基部から分岐する新奇嫌気性生物PAP020株のミトコンドリア様オルガネラの代謝機能の推測
矢崎裕規; 白鳥峻志; 久米慶太郎; 橋本哲男; 石田健一郎; 稲垣 祐司
第85回日本寄生虫学会/2016-03-19--2016-03-20 - Prediction and comparison of the metabolism of mitochondrion-related organelles in free-living fornicate organisms.
Keitaro Kume; Shun Takabayashi; Ryoma Kamikawa; Goro Tan...
2nd International Symposium on Matryoshka-type Evolution of Eukaryotic Cells/2015-09-30--2015-10-02 - トランスクリプトームデータを基盤とした大規模分子系統解析による新奇嫌気性真核微生物PAP020株の系統的位置の解明
矢崎裕規; 白鳥隆志; 久米慶太郎; 橋本哲男; 石田健一郎; 稲垣 祐司
日本進化学会第17回大会/2015-08-20--2015-08-21 - Strain PAP020, a novel anaerobic microeukaryote branching at the base of Fornicata.
Euki Yazaki; Takashi Shiratori; Keitaro Kume; Sohta A Is...
VII ECOP-ISOP Joint Meeting 2015/2015-09-05--2015-09-10 - Is a microaerophilic flagellate strain PAP020 is the most basal member of the Fornicata?
Euki Yazaki; Takashi Shiratori; Keitaro Kume; Sohta A Is...
Annual Meeting of Canadian Institute for Advanced Research, Integrated Microbial Biodiversity Program/2015-05-27--2015-05-29 - Genome and transcriptome analyses of the Fornicata organism, Kipferlia bialata, based on the establishment of monoxenic culture.
高林舜; 谷藤吾朗; 久米慶太郎; 稲垣 祐司; 橋本哲男
第84回日本寄生虫学会大会/2015-03-21--2015-03-22 - キネトプラスチダ類における寄生性鞭毛虫の系統的位置と寄生性形質獲得プロセスの解明
矢﨑裕規; 石川奏太; 久米慶太郎; 谷藤吾朗; 橋本哲男; 稲垣 祐司
日本進化学会第16回大会/2014-08-21--2014-08-24 - more...
- 寄生虫化に伴うディプロモナス類の遺伝子レパートリーの変化.
- Teaching
2022-07 -- 2022-07 Frontier Informatics A University of Tsukuba. 2021-07 -- 2021-07 Frontier Informatics A University of Tsukuba. 2020-07 -- 2020-07 フロンティアインフォマティクス特論A 筑波大学
(Last updated: 2024-10-09)