Inagaki Yuji
- Articles
- Comparative plastid genomics of Cryptomonas species reveals fine-scale genomic responses to loss of photosynthesis.
Tanifuji Goro; Kamikawa Ryoma; Moore Christa E; Mills Ty...
Genome Biology and Evolution/12(2)/pp.3926-3937, 2020-02 - Large DNA virus promoted the endosymbiotic evolution to make a photosynthetic eukaryote
Matsuo Mitsuhiro; Katahata Atsushi; Tchikawa Makoto; Mina...
bioRχiv, 2019-10 - Barthelonids represent a deep-branching Matamonada clade with mitochondrion-related organelles generating no ATP.
Euki Yazaki; Kume Keitaro; Takashi Shiratori; Yana Edlit...
bioRχiv, 2019-10 - Single-cell genomics unveiled a cryptic cyanobacterial lineage with a worldwide distribution hidden by a dinoflagellate host
Nakayama Takuro; Mami Nomura; Yoshihito Takano; Tanifuji ...
Proceedings of the National Academy of Sciences/116(32)/pp.15973-15978, 2019-06 - In silico strcutral modelling and analysis of elongation factor 1alpha and elongation factor-like proteins.
Kotaro Sakamoto; Megumi Kayanuma; Inagaki Yuji; Tetsuo H...
ACS Omega/4(4)/pp.7308-7316, 2019-04 - Horizontally-acquired genetic elements in the mitochondrial genome of a centrohelid Marophrys sp. SRT127.
Yuki Nishimura; Takashi Shiratori; Kenichro Ishida; Tetsu...
Scientific Reports/9/p.4850, 2019-03 - Fates of evolutionarily distinct, plastid-type glyceraldehyde 3-phosphate dehydrogenase genes in kareniacean dinoflagellates.
Ryoma Kamikawa; Euki Yazaki; Michiru Tahara; Takaya Saku...
Journal of Eukaryotic Microbiology/65(6)/pp.669-678, 2018-09 - Characterization of spliced leader trans-splicing in a photosynthetic rhizarian amoeba, Paulinella micropora, and its possible role in functional gene transfer.
Matsuo Mitsuhiro; Katahata Atsushi; Satoh Soichirou; Mats...
PLOS ONE/13(7)/p.e0200961, 2018-07 - Patterns in evolutionary origins of heme, chlorophyll a and isopentenyl diphosphate biosynthetic pathways suggest non-photosynthetic periods prior to plastid replacements in dinoflagellates.
Eriko Matsuo; Inagaki Yuji
PeerJ/6/p.e5345, 2018-07 - Extensive molecular tinkering in the evolution of the membrane attachment mechanisms of the Rheb GTPase.
Záhonová Kristína; Petrželková Romana; Valach Matúš; Yaza...
Scientific Reports/8/p.5239, 2018-03 - The draft genome of Kipferlia bialata reveals reductive genome evolution in fornicate parasites.
Tanifuji Goro; Takabayashi Shun; Kume Keitaro; Takagi Mi...
PLOS ONE/13(3)/p.e0194487, 2018-03 - Phylogenomics places orpha protistan lineages in a novel candidate supergroup.
Brown Matthew R; Heiss Aaron A; Kamikawa Ryoma; Inagak...
Genome Biology and Evolution/10(2)/pp.427-433, 2018-01 - Genomic divergence within non-photosynthetic cyanobacterial endosymbionts in rhopalodiacean diatoms.
Nakayama Takuro; Inagaki Yuji
Scientific Reports/7/p.13075, 2017-10 - Genome sequencing reveals metabolic and cellular interdependence in an amoeba-kinetoplastid symbiosis.
Tanifuji Goro; Cenci Ugo; Mood Daniel; Dean Samuel; Nakay...
Scientific Reports/7/p.111688, 2017-10 - A non-photosynthetic diatom revelas early steps of reductive evolution in plastids.
Kamikawa Ryoma; Moog Daniel; Zauner Stefan; Tanifuji Gor...
Molecular Biology and Evolution/34(9)/pp.2355-2366, 2017-09 - Global Kinetoplastea phylogeny inferred from a large-scale multigene alignment including prarasitic species for better understanding transitions from a free-living to a parasitic lifestyle.
Yazaki Euki; Ishikawa Sohta; Kume Keitaro; Kumagai Akira...
Genes & Genetic Systems/92(1)/pp.35-42, 2017-9 - Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes.
Leger Michelle M; Kolisko Martin; Kamikawa Ryoma; Stairs ...
Nature Ecology & Evolution/1(4)/p.0092, 2017-02 - Mitochondria genome of Palpitomonas bilix: Derived genome structure and ancestral system for cytochrome c maturation.
Yuki Nishimura; Goro Tanifuji; Ryoma Kamikawa; Akinori Yabuk...
Genome Biology and Evolution/8(10)/pp.3090-3098, 2016-10 - A system for supporting phylogenetic analyses over alignments of next generation sequence data.
Yuki Nishimura; Toshiyuki Amagasa; Inagaki Yuji; Tetsuo Hash...
Proceedings for the 10th International Conference on Complex, Intelligent, and Software Intensive Systems (CISIS-2016)/pp.230-237, 2016-07 - シアノバクテリアと真核藻類の細胞統合―「窒素固定オルガネラ」へ続く道?
中山卓郎; 稲垣 祐司
生物の科学 遺伝/70(2)/pp.176-1809, 2016-03 - 共生体由来オルガネラにまつわるエトセトラ.
稲垣 祐司
生物の科学 遺伝/70(2)/pp.156-160, 2016-03 - Ungulate malaria parasites
Tomas K. Templeton; Masahito Asada; Montakan Jiratanh; Sohta...
Scientific Reports/6/p.23230, 2016-03 - Metabolic capacity of mitochondrion-related organelle in the free-living anaerobic stramenopile Cantina marsuplialis.
Noguchi Fumiya; Shimamura Shigeru; Nakayama Takuro; Yazak...
Protist/166(5)/pp.534-550, 2015-11 - Proposal of a Twin-arginine translocator system-mediated constraint against loss of ATP synthase genes from nonphotosynthetic plastid genomes.
Ryoma Kamikawa; Goro Tanifuji; Sohta A Ishikawa; Ken-ichiro ...
Molecular Biology and Evolution/32(10)/pp.2598-2604, 2015-10 - Multiple conversion between the genes encoding bacterial class-I release factors
Sohta Ishikawa; Ryoma Kamikawa; Inagaki Yuji
Scientific Reports/5/p.12406, 2015-08 - more...
- Comparative plastid genomics of Cryptomonas species reveals fine-scale genomic responses to loss of photosynthesis.