INAGAKI Yuji
- Articles
- Separate Origins of Group I Introns in Two Mitochondrial Genes of the Katablepharid Leucocryptos marina
Nishimura Yuki; Kamikawa Ryoma; Hashimoto Tetsuo; Inagaki...
PLOS ONE/7(5)/p.e37307, 2012-05 - Multigene phylogenies of diverse Carpediemonas-like organisms identify the closest relatives of 'amitochndriate' diplomonads and retortamonads
Takishita K*; Kolisko M*; Komatsuzaki H; Yabuki A; Inagaki Y; ...
Protist/16(3)/p.344-355, 2012-02 - An asynchronous parallel genetic algorithm for the maximum likelihood phylogenetic tree search.
Tsuji M; Sato M; Tanabe AS; Inagaki Y; Hashimoto T.
Proceedings of 2012 IEEE Congress on Evolutionary Computation (CEC)/2012/pp.1-8, 2012-01 - Separate origins of group I introns in two mitochondrial genes of the katablepharid Leucocryptos marina
Nishimura Y*; Kamikawa R*; Hashimoto T; Inagaki Y
PLoS One/7(5)/p.e37307, 2012-01 - Multigene phylogenetic analyses including diverse radiolarian species support the "Retaria" hypothesis - The sister relationship of Radiolaria and Foraminifera
Ishitani Yoshiyuki; Ishikawa Sohta A.; Inagaki Yuji; Tsuc...
MARINE MICROPALEONTOLOGY/81(1-2)/pp.32-42, 2011-11 - Tsukubamonas globosa n. gen., n. sp., a novel excavate flagellate possibly holding a key for the early evolution in "Discoba"
Yabuki Akinori; Nakayama Takeshi; Yubuki Naoji; Hashimoto...
JOURNAL OF EUKARYOTIC MICROBIOLOGY/58(4)/pp.319-331, 2011-07 - A deviant genetic code in the green alga-derived plastid in the dinoflagellate Lepidodinium chlorophorum
Matsumoto Takuya; Ishikawa Sohta A.; Hashimoto Tetsuo; In...
MOLECULAR PHYLOGENETICS AND EVOLUTION/60(1)/pp.68-72, 2011-07 - Splintrons in Giardia intestinalis: Spliceosomal introns in a split form
Kamikawa R; Inagaki Y; Roger AJ; Hashimoto T
Communicative and Integrative Biology/4(4)/p.454-456, 2011-04 - Green-colored plastids in the dinoflagellate genus Lepidodinium are of core chlorophyte origin
Matsumoto Takuya; Shinozaki Fumihiko; Chikuni Tomoko; Yab...
PROTIST/162(2)/pp.268-276, 2011-04 - Split introns in the genome of Giardia intestinalis are excised by spliceosome-mediated trans-splicing
Kamikawa Ryoma; Inagaki Yuji; Tokoro Masaharu; Roger And...
CURRENT BIOLOGY/21(4)/pp.311-315, 2011-02 - A novel spliceosome-mediated trans-splicing can change our view on genome complexity of the divergent eukaryote Giardia intestinalis
Kamikawa R; Inagaki Y; Hashimoto T
Biophysical Reviews/3(4)/pp.193-197, 2011-01 - Cercozoa comprises both EF-1 alpha-containing and EFL-containing members
Kamikawa Ryoma; Yabuki Akinori; Nakayama Takuro; Ishida ...
EUROPEAN JOURNAL OF PROTISTOLOGY/47(1)/pp.24-28, 2011-01 - Spheroid bodies in rhopalodiacean diatoms were derived from a single endosymbiotic cyanobacterium
Nakayama Takuro; Ikegami Yuko; Nakayama Takeshi; Ishida ...
JOURNAL OF PLANT RESEARCH/124(1)/pp.93-97, 2011-01 - Mitochondrial genomes from two red tide forming raphidophycean algae Heterosigma akashiwo and Chattonella marina var. marina
Masuda Isao; Kamikawa Ryoma; Ueda Manabu; Oyama Kenichi; ...
HARMFUL ALGAE/10(2)/pp.130-137, 2011-01 - Comprehensive SSU rRNA phylogeny of Eukaryota.
Ishida K; Inagaki Y; Sakaguchi M; Oiwa A; Kai Atsushi; Su...
Journal of Endocytobiosis and Cell Research/20/p.81-88, 2010-12 - Cryptic diversity of free-living parabasalids, Pseudotrichomonas keilini and Lacusteria cypriaca n. gen. et sp., as inferred from SSU rDNA sequences.
Yubuki N Cé za V Cepicka I Yabuki A Inagaki Y ...
Journal of Eukaryotic Microbiology/57(6)/p.554-561, 2010-11 - Palpitomonas bilix gen. et sp. nov: A novel deep-branching heterotroph possibly related to Archaeplastida or Hacrobia.
Yabuki A; Inagaki Y; Ishida K
Protist/210(4)/p.523-538, 2010-10 - A wide diversity of previously undetected free-living relatives of diplomonads isolated from marine/saline habitats.
Kolisko M; Silberman JD; Cepicka I; Yubuki N; Takishita ...
Environmental Microbiology/12/pp.2700-2710, 2010-10 - Rooting for the root of elongation factor-like protein phylogeny
Kamikawa Ryoma; Sakaguchi Miako; Matsumoto Takuya; Hashim...
MOLECULAR PHYLOGENETICS AND EVOLUTION/56(3)/pp.1082-1088, 2010-09 - A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum
Minge Marianne A.; Shalchian-Tabrizi Kamran; Torresen Ol...
BMC EVOLUTIONARY BIOLOGY/10/pp.0-0, 2010-06 - Phylogeny of Asian primate malaria parasites inferred from apicoplast genome-encoded genes with special emphasis on the positions of Plasmodium vivax and P. fragile
Mitsui Hideya; Arisue Nobuko; Sakihama Naoko; Inagaki Yu...
GENE/450(1-2)/pp.32-38, 2010-01 - Expanded phylogenies of canonical and non-canonical types of methionine adenosyltransferase reveal a complex history of these gene families in eukaryotes
Kamikawa Ryoma; Sanchez-Perez Gabino F.; Sako Yoshihiko; ...
MOLECULAR PHYLOGENETICS AND EVOLUTION/53(2)/pp.565-570, 2009-11 - Tracing back EFL gene evolution in the cryptomonads-haptophytes assemblage: Separate origins of EFL genes in haptophytes, photosynthetic cryptomonads, and goniomonads
Sakaguchi Miako; Takishita Kiyotaka; Matsumoto Takuya; Ha...
GENE/441(1-2:::Sp. Iss. SI)/pp.126-131, 2009-07 - Eukaryotic origin of glyceraldehyde-3-phosphate dehydrogenase genes in Clostridium thermocellum and Clostridium cellulolyticum genomes and putative fates of the exogenous gene in the subsequent genome evolution
Takishita Kiyotaka; Inagaki Yuji
GENE/441(1-2:::Sp. Iss. SI)/pp.22-27, 2009-07 - Gene sampling can bias multi-gene phylogenetic inferences: The relationship between red algae and green plants as a case study
Inagaki Yuji; Nakajima Yoshihiro; Sato Mitsuhisa; Sakaguc...
MOLECULAR BIOLOGY AND EVOLUTION/26(5)/pp.1171-1178, 2009-05 - more...
- Separate Origins of Group I Introns in Two Mitochondrial Genes of the Katablepharid Leucocryptos marina