INAGAKI Yuji
- Articles
- A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum
Minge Marianne A.; Shalchian-Tabrizi Kamran; Torresen Ol...
BMC EVOLUTIONARY BIOLOGY/10/pp.0-0, 2010-06 - Phylogeny of Asian primate malaria parasites inferred from apicoplast genome-encoded genes with special emphasis on the positions of Plasmodium vivax and P. fragile
Mitsui Hideya; Arisue Nobuko; Sakihama Naoko; Inagaki Yu...
GENE/450(1-2)/pp.32-38, 2010-01 - Expanded phylogenies of canonical and non-canonical types of methionine adenosyltransferase reveal a complex history of these gene families in eukaryotes
Kamikawa Ryoma; Sanchez-Perez Gabino F.; Sako Yoshihiko; ...
MOLECULAR PHYLOGENETICS AND EVOLUTION/53(2)/pp.565-570, 2009-11 - Tracing back EFL gene evolution in the cryptomonads-haptophytes assemblage: Separate origins of EFL genes in haptophytes, photosynthetic cryptomonads, and goniomonads
Sakaguchi Miako; Takishita Kiyotaka; Matsumoto Takuya; Ha...
GENE/441(1-2:::Sp. Iss. SI)/pp.126-131, 2009-07 - Eukaryotic origin of glyceraldehyde-3-phosphate dehydrogenase genes in Clostridium thermocellum and Clostridium cellulolyticum genomes and putative fates of the exogenous gene in the subsequent genome evolution
Takishita Kiyotaka; Inagaki Yuji
GENE/441(1-2:::Sp. Iss. SI)/pp.22-27, 2009-07 - Gene sampling can bias multi-gene phylogenetic inferences: The relationship between red algae and green plants as a case study
Inagaki Yuji; Nakajima Yoshihiro; Sato Mitsuhisa; Sakaguc...
MOLECULAR BIOLOGY AND EVOLUTION/26(5)/pp.1171-1178, 2009-05 - A hypothesis for the evolution of nuclear-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase genes in "chromalveolate" members.
Takishita K; Yamaguchi H; Maruyama T; Inagaki Y.
PLoS ONE/4(3)/p.e4737, 2009-03 - Large-Scale Phylogenomic Analyses Reveal That Two Enigmatic Protist Lineages, Telonemia and Centroheliozoa, Are Related to Photosynthetic Chromalveolates
Burki Fabien; Inagaki Yuji; Brate Jon; Archibald John M....
GENOME BIOLOGY AND EVOLUTION/1/pp.231-238, 2009-01 - Direct phylogenetic evidence for lateral transfer of elongation factor-like gene
Kamikawa Ryoma; Inagaki Yuji; Sako Yoshihiko
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA/105(19)/pp.6965-6969, 2008-05 - Origins of plastids and glyceraldehyde-3-phosphate dehydrogenase genes in the green-colored dinoflagellate Lepidodinium chlorophorum
Takishita Kiyotaka; Kawachi Masanobu; Noel Mary-Helene; M...
GENE/410(1)/pp.26-36, 2008-02 - Evolving genetic codes.
Ohama T; Inagaki Y; Bessho Y; Osawa S.
Proceedings of the Japan Academy, Ser. B/84(2)/p.58-74, 2008-01 - Phylogenetic inference based on combined analysis of multiple genes: Illustrative data analysis of higher-order phylogeny of Eukaryota
橋本哲男; 有末伸子; 坂口美亜子; 稲垣祐司
統計数理/56(1)/p.145-164, 2008-01 - Centrohelida is still searching for a phylogenetic home: Analyses of seven Raphidiophrys contractilis genes
Sakaguchi Miako; Inagaki Yuji; Hashimoto Tetsuo
GENE/405(1-2)/pp.47-54, 2007-12 - Assessing the monophyly of chlorophyll-c containing plastids by multi-gene phylogenies under the unlinked model conditions.
Iida K; Takishita K; Ohshima K; Inagaki Y.
Molecular Phylogenetics and Evolution/45(1)/p.227-238, 2007-10 - Assessing the monophyly of chlorophyll-c containing plastids by multi-gene phylogenies under the unlinked model conditions
Iida Kei; Takishita Kiyotaka; Ohshima Kazuhiko; Inagaki ...
MOLECULAR PHYLOGENETICS AND EVOLUTION/45(1)/pp.227-238, 2007-10 - Proposal of Pseudochattonella verruculosa gen. nov., comb. nov. (Dictyochophyceae) for a former raphidophycean Chattonella verruculosa, based on 18S rDNA phylogeny and ultrastructural characteristics.
Hosoi-Tanabe S; Honda D; Fukaya S; Otake I; Inagaki Y; Sa...
Phycological Research/55(3)/p.185-192, 2007-09 - ロングブランチの誘惑-分子系統解析のダークサイド
稲垣 祐司
The Japanese journal of phycology/55(2)/pp.111-116, 2007-07 - Diversity of microbial eukaryotes in sediment at a deep-sea methane cold seep: surveys of ribosomal DNA libraries from raw sediment samples and two enrichment cultures
Takishita Kiyotaka; Yubuki Naoji; Kakizoe Natsuki; Inagak...
EXTREMOPHILES/11(4)/pp.563-576, 2007-07 - Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages
Patron Nicola J.; Inagaki Yuji; Keeling Patrick J.
CURRENT BIOLOGY/17(10)/pp.887-891, 2007-05 - Fragmentation of mitochondrial large subuint rRNA in a dinoflagellate Alexandrium catenella and the evolution of rRNA structure in alveolate mitochondria.
Kamikawa R; Inagaki Y; Sako Y.
Protist/158(2)/p.239-245, 2007-04 - Ultrastructure and ribosomal RNA phylogeny of the free-living heterotrophic flagellate Dysnectes brevis n. gen., n. sp., a new member of the fornicata
Yubuki Naoji; Inagaki Yuji; Nakayama Takeshi; Inoue Isao
JOURNAL OF EUKARYOTIC MICROBIOLOGY/54(2)/pp.191-200, 2007-03 - Plasticity of the domain structure in FlgJ, a bacterial protein involved in flagellar rod formation
Nambu Takayuki; Inagaki Yuji; Kutsukake Kazuhiro
GENES & GENETIC SYSTEMS/81(6)/pp.381-389, 2006-12 - Phylogenetic estimation under codon models can be biased by codon usage heterogeneity
Inagaki Yuji; Roger Andrew
MOLECULAR PHYLOGENETICS AND EVOLUTION/40(2)/pp.428-434, 2006-08 - Comprehensive multigene phylogenies of excavate protists reveal the evolutionary positions of "primitive" eukaryotes
Simpson AGB; Inagaki Y; Roger AJ
MOLECULAR BIOLOGY AND EVOLUTION/23(3)/pp.615-625, 2006-03 - Recombination between elongation factor 1 alpha genes from distantly related archaeal lineages
Inagaki Y; Susko E; Roger AJ
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA/103(12)/pp.4528-4533, 2006-03 - more...
- A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum