INAGAKI Yuji

Researcher's full information

Articles

• A hypothesis for the evolution of nuclear-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase genes in "chromalveolate" members.
  Takishita K; Yamaguchi H; Maruyama T; Inagaki Y.
  PLoS ONE/4(3)/p.e4737, 2009-03
• Large-Scale Phylogenomic Analyses Reveal That Two Enigmatic Protist Lineages, Telonemia and Centroheliozoa, Are Related to Photosynthetic Chromalveolates
  Burki Fabien; Inagaki Yuji; Brate Jon; Archibald John M....
  GENOME BIOLOGY AND EVOLUTION/1/pp.231-238, 2009-01
• Direct phylogenetic evidence for lateral transfer of elongation factor-like gene
  Kamikawa Ryoma; Inagaki Yuji; Sako Yoshihiko
  PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA/105(19)/pp.6965-6969, 2008-05
• Origins of plastids and glyceraldehyde-3-phosphate dehydrogenase genes in the green-colored dinoflagellate Lepidodinium chlorophorum
  Takishita Kiyotaka; Kawachi Masanobu; Noel Mary-Helene; M...
  GENE/410(1)/pp.26-36, 2008-02
• Evolving genetic codes.
  Ohama T; Inagaki Y; Bessho Y; Osawa S.
  Proceedings of the Japan Academy, Ser. B/84(2)/p.58-74, 2008-01
• Phylogenetic inference based on combined analysis of multiple genes: Illustrative data analysis of higher-order phylogeny of Eukaryota
  橋本哲男; 有末伸子; 坂口美亜子; 稲垣祐司
  統計数理/56(1)/p.145-164, 2008-01
• Centrohelida is still searching for a phylogenetic home: Analyses of seven Raphidiophrys contractilis genes
  Sakaguchi Miako; Inagaki Yuji; Hashimoto Tetsuo
  GENE/405(1-2)/pp.47-54, 2007-12
• Assessing the monophyly of chlorophyll-c containing plastids by multi-gene phylogenies under the unlinked model conditions.
  Iida K; Takishita K; Ohshima K; Inagaki Y.
  Molecular Phylogenetics and Evolution/45(1)/p.227-238, 2007-10
• Assessing the monophyly of chlorophyll-c containing plastids by multi-gene phylogenies under the unlinked model conditions
  Iida Kei; Takishita Kiyotaka; Ohshima Kazuhiko; Inagaki ...
  MOLECULAR PHYLOGENETICS AND EVOLUTION/45(1)/pp.227-238, 2007-10
• Proposal of Pseudochattonella verruculosa gen. nov., comb. nov. (Dictyochophyceae) for a former raphidophycean Chattonella verruculosa, based on 18S rDNA phylogeny and ultrastructural characteristics.
  Hosoi-Tanabe S; Honda D; Fukaya S; Otake I; Inagaki Y; Sa...
  Phycological Research/55(3)/p.185-192, 2007-09
• ロングブランチの誘惑-分子系統解析のダークサイド
  稲垣 祐司
  The Japanese journal of phycology/55(2)/pp.111-116, 2007-07
  
  CiNii
• Diversity of microbial eukaryotes in sediment at a deep-sea methane cold seep: surveys of ribosomal DNA libraries from raw sediment samples and two enrichment cultures
  Takishita Kiyotaka; Yubuki Naoji; Kakizoe Natsuki; Inagak...
  EXTREMOPHILES/11(4)/pp.563-576, 2007-07
• Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages
  Patron Nicola J.; Inagaki Yuji; Keeling Patrick J.
  CURRENT BIOLOGY/17(10)/pp.887-891, 2007-05
• Fragmentation of mitochondrial large subuint rRNA in a dinoflagellate Alexandrium catenella and the evolution of rRNA structure in alveolate mitochondria.
  Kamikawa R; Inagaki Y; Sako Y.
  Protist/158(2)/p.239-245, 2007-04
• Ultrastructure and ribosomal RNA phylogeny of the free-living heterotrophic flagellate Dysnectes brevis n. gen., n. sp., a new member of the fornicata
  Yubuki Naoji; Inagaki Yuji; Nakayama Takeshi; Inoue Isao
  JOURNAL OF EUKARYOTIC MICROBIOLOGY/54(2)/pp.191-200, 2007-03
• Plasticity of the domain structure in FlgJ, a bacterial protein involved in flagellar rod formation
  Nambu Takayuki; Inagaki Yuji; Kutsukake Kazuhiro
  GENES & GENETIC SYSTEMS/81(6)/pp.381-389, 2006-12
  
  CiNii
• Phylogenetic estimation under codon models can be biased by codon usage heterogeneity
  Inagaki Yuji; Roger Andrew
  MOLECULAR PHYLOGENETICS AND EVOLUTION/40(2)/pp.428-434, 2006-08
• Comprehensive multigene phylogenies of excavate protists reveal the evolutionary positions of "primitive" eukaryotes
  Simpson AGB; Inagaki Y; Roger AJ
  MOLECULAR BIOLOGY AND EVOLUTION/23(3)/pp.615-625, 2006-03
• Recombination between elongation factor 1 alpha genes from distantly related archaeal lineages
  Inagaki Y; Susko E; Roger AJ
  PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA/103(12)/pp.4528-4533, 2006-03
  
  PubMed
• A close relationship between Cercozoa and Foraminifera supported by phylogenetic analyses based on combined amino acid sequences of three cytoskeletal proteins (actin, alpha-tubulin, and beta-tubulin)
  Takishita K; Inagaki Y; Tsuchiya M; Sakaguchi M; Maruyama T
  GENE/362/pp.153-160, 2005-12
• The evolutionary relationships amongst excavates: a concatenated protein analysis.
  Simpson AGB; Inagaki Y; Roger AJ.
  Journal of Eukaryotic Microbiology/52/p.7S-27S, 2005-01
• Capsaspora owczarzaki is an independent opisthokont lineage.
  Ruiz-Trillo I; Inagaki Y; Davis LA; Sperstad S; Landfald ...
  Current Biology/14(22)/p.R946-R947, 2004-11
• A class of eukaryotic GTPase with a punctuate distribution suggesting multiple functional replacements of translation elongation factor 1α.
  Keeling PJ; Inagaki Y.
  Proceedings of the National Academy of Sciences USA/101(43)/p.15380-15385, 2004-10
• On inconsistency of the neighbor-joining, least-squares, and minimum evolution estimation when substitution processes are incorrectly modeled.
  Susko E; Inagaki Y; Roger AJ.
  Molecular Biology and Evolution/21(9)/p.1629-1642, 2004-09
• Phylogenetic artifacts can be caused by leucine, serine and arginine codon usage heterogeneity: dinoflagellate plastid origins as a case study.
  Inagaki Y; Simpson AGB; Dacks JB; Roger AJ.
  Systematic Biology/53(4)/p.582-593, 2004-08
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