Inagaki Yuji

Researcher's full information

Articles
  • The evolutionary relationships amongst excavates: a concatenated protein analysis.
    Simpson AGB; Inagaki Y; Roger AJ.
    Journal of Eukaryotic Microbiology/52/p.7S-27S, 2005-01
  • Capsaspora owczarzaki is an independent opisthokont lineage.
    Ruiz-Trillo I; Inagaki Y; Davis LA; Sperstad S; Landfald ...
    Current Biology/14(22)/p.R946-R947, 2004-11
  • A class of eukaryotic GTPase with a punctuate distribution suggesting multiple functional replacements of translation elongation factor 1α.
    Keeling PJ; Inagaki Y.
    Proceedings of the National Academy of Sciences USA/101(43)/p.15380-15385, 2004-10
  • On inconsistency of the neighbor-joining, least-squares, and minimum evolution estimation when substitution processes are incorrectly modeled.
    Susko E; Inagaki Y; Roger AJ.
    Molecular Biology and Evolution/21(9)/p.1629-1642, 2004-09
  • Phylogenetic artifacts can be caused by leucine, serine and arginine codon usage heterogeneity: dinoflagellate plastid origins as a case study.
    Inagaki Y; Simpson AGB; Dacks JB; Roger AJ.
    Systematic Biology/53(4)/p.582-593, 2004-08
  • Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1α phylogenies.
    Inagaki Y; Susko E; Fast NM; Roger AJ.
    Molecular Biology and Evolution/21(7)/p.1340-1349, 2004-07
  • Assessing functional divergence in EF-1α and its paralogs in eukaryotes and archaebacteria.
    Inagaki Y; Blouin C; Susko E; Roger AJ.
    Nucleic Acids Research/31(14)/p.4227-4237, 2003-07
  • Testing for differences in rates-across-sites distributions in phylogenetic subtrees.
    Susko E; Inagaki Y; Field C; Holder ME; Roger AJ.
    Molecular Biology and Evolution/19(9)/p.1514-1523, 2002-09
  • Lateral transfer of an EF-1α gene: origin and evolution of the large subunit of ATP sulfurylase in Eubacteria.
    Inagaki Y; Doolittle WF; Baldauf SL; Roger AJ.
    Current Biology/12(9)/p.774-776, 2002-04
  • Convergence and constraint in eukaryotic release factor 1 domain 1: the evolution of stop codon specificity.
    Inagaki Y; Blouin C; Doolittle WF; Roger AJ.
    Nucleic Acids Research/30(2)/p.532-544, 2002-01
  • Class I release factors in ciliates with variant genetic codes.
    Inagaki Y; Doolittle WF.
    Nucleic Acids Research/29(4)/p.921-927, 2001-02
  • Evolutionary relationship between dinoflagellates bearing obligate diatom endosymbionts: insight into tertiary endosymbiosis.
    Inagaki Y; Dacks JB; Doolittle WF; Watanabe KI; Ohama T.
    International Journal of Systematics and Evolutionary Microbiology/50(6)/p.2075-2081, 2000-11
  • Evolution of the eukaryotic translation termination system: origins of release factors.
    Inagaki Y; Doolittle WF.
    Molecular Biology and Evolution/17(6)/p.882-889, 2000-06
  • Phylogenetic analysis of diatom coxI genes and implications of a fluctuating GC content on mitochondrial genetic code evolution.
    Ehara M; Inagaki Y; Watanabe KI; Ohama T.
    Current Genetics/37(1)/p.29-33, 2000-01
  • Comprehensive molecular phylogenetic analysis of a heterokont alga (NIES 548) using genes from all three cellular compartments.
    Ehara M; Kitayama T; Watanabe KI; Inagaki Y; Hayashi-Ishi...
    Phycological Research/47(3)/p.225-231, 1999-09
  • Distribution of the mitochondrial deviant genetic code, AUA for methionine, in heterokont algae.
    Ehara M; Watanabe KI; Kawai H; Inagaki Y; Hayashi-Ishimar...
    Journal of Phycology/34(6)/p.1105-1008, 1998-12
  • Directionally evolving genetic code: the UGA codon from stop to tryptophan in mitochondria.
    Inagaki Y; Ehara M; Watanabe KI; Hayashi-Ishimaru Y; Oham...
    Journal of Molecular Evolution/47(4)/p.378-384, 1998-10
  • Distinctive origins of group I introns found in the COXI genes of three green algae.
    Watanabe KI; Ehara M; Inagaki Y; Ohama T.
    Gene/213(1-2)/p.1-7, 1998-06
  • A deviant mitochondrial genetic code in prymnesiophytes (yellow-algae): UGA codon for tryptophan.
    Hayashi-Ishimaru Y; Ehara M; Inagaki Y; Ohama T.
    Current Genetics/32(4)/p.296-299, 1997-10
  • Algae or protozoa: phylogenetic position of euglenophytes and dinoflagellates as inferred from mitochondrial sequences.
    Inagaki Y; Hayashi-Ishimaru Y; Ehara M; Igarashi I; Ohama...
    Journal of Molecular Evolution/45(3)/p.295-300, 1997-09
  • Use of a deviant mitochondrial genetic code in yellow-green algae as a landmark for segregating members within the phylum.
    Ehara M; Hayashi-Ishimaru Y; Inagaki Y; Ohama T.
    Journal of Molecular Evolution/45(2)/p.119-24, 1997-08
  • Cloning of the Mycoplasma capricolum gene encoding peptide-chain release factor.
    Inagaki Y; Bessho Y; Hori H; Osawa S.
    Gene/169(1)/p.101-103, 1996-02
  • Translation of synonymous codons in family boxes by Mycoplasma capricolum tRNAs with unmodified uridine or adenosine at the first anticodon position.
    Inagaki Y; Kojima A; Bessho Y; Hori H; Ohama T; Osawa S.
    Journal of Molecular Biology/251(4)/p.486-492, 1995-08
  • Lack of peptide-release activity responding to codon UGA in Mycoplasma capricolum.
    Inagaki Y; Bessho Y; Osawa S.
    Nucleic Acids Research/21(6)/p.1335-1338, 1993-03