HIROKAWA Takatsugu
- Articles
- Crystal structure of Staphylococcus aureus lipase complex with unsaturated petroselinic acid
Kitadokoro Julia; Kamitani Shigeki; Okuno Yukiko; Hiki...
FEBS OPEN BIO/14(6)/pp.942-954, 2024-06 - Lipid bilayer membrane permeability mechanism of the K-Ras (G12D)-inhibitory bicyclic peptide KS-58 elucidated by molecular dynamics simulations
Sakamoto Kotaro; Hirokawa Takatsugu
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS/100, 2024-03-01 - Biological Evaluation of Isosteric Applicability of 1,3-Substituted Cuneanes as m-Substituted Benzenes Enabled by Selective Isomerization of 1,4-Substituted Cubanes
Fujiwara Kan; Nagasawa Shota; Maeyama Ryusei; Segawa ...
CHEMISTRY-A EUROPEAN JOURNAL/30(11), 2024-02-21 - Site Identification and Next Choice Protocol for Hit-to-Lead Optimization
Kudo Genki; Hirao Takumi; Yoshino Ryunosuke; Shigeta ...
JOURNAL OF CHEMICAL INFORMATION AND MODELING/64(11)/pp.4475-4484, 2024-05-20 - AAp-MSMD: Amino Acid Preference Mapping on Protein-Protein Interaction Surfaces Using Mixed-Solvent Molecular Dynamics
Kudo Genki; Yanagisawa Keisuke; Yoshino Ryunosuke; Hir...
JOURNAL OF CHEMICAL INFORMATION AND MODELING/63(24)/pp.7768-7777, 2023-12-25 - Modeling the structure of the transmembrane domain of T1R3, a subunit of the sweet taste receptor, with neohesperidin dihydrochalcone using molecular dynamics simulation
Nakagita Tomoya; Matsuya Takumi; Narukawa Masataka; Ko...
BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY/87(12)/pp.1470-1477, 2023-11-21 - Identification of Chemicals That Abrogate Folate-Dependent Inhibition of Starch Accumulation in Non-Photosynthetic Plastids of Arabidopsis
Kawada Yoshihiro; Hayashi Eriko; Katsuragi Yuya; Imamu...
PLANT AND CELL PHYSIOLOGY/Epub, 2023-10-06 - Identification of a novel CDK9 inhibitor targeting the intramolecular hidden cavity of CDK9 induced by Tat binding
Asamitsu Kaori; Hirokawa Takatsugu; Okamoto Takashi
PLOS ONE/17(11), 2022-04-01 - A multipoint guidance mechanism for β-barrel folding on the SAM complex
Takeda Hironori; Busto Jon V; Lindau Caroline; Tsutsum...
NATURE STRUCTURAL & MOLECULAR BIOLOGY/30(2)/pp.176-187, 2023-02-01 - Inhibition of cellular RNA methyltransferase abrogates influenza virus capping and replication
Tsukamoto Yuta; Hiono Takahiro; Yamada Shintaro; Matsu...
SCIENCE/379(6632)/pp.586-591, 2023-02-10 - Quantitative comparison of protein-protein interaction interface using physicochemical feature-based descriptors of surface patches
Shin Woong-Hee; Kumazawa Keiko; Imai Kenichiro; Hiroka...
Frontiers in molecular biosciences/10, 2023-04-01 - Pocket to concavity: a tool for the refinement of protein-ligand binding site shape from alpha spheres
Kudo Genki; Hirao Takumi; Yoshino Ryunosuke; Shigeta ...
BIOINFORMATICS/39(4), 2023-04-03 - Structural and energetic basis for differential binding of Ebola and Marburg virus glycoproteins to a bat-derived Niemann-Pick C1 protein
Igarashi Manabu; Hirokawa Takatsugu; Takada Ayato
JOURNAL OF INFECTIOUS DISEASES/228(7:SI)/pp.S479-S487, 2023-04-29 - Distinct Profiles of Desensitization of µ-Opioid Receptors Caused by Remifentanil or Fentanyl: In Vitro Assay with Cells and Three-Dimensional Structural Analyses
Uezono Eiko; Mizobuchi Yusuke; Miyano Kanako; Ohbuchi ...
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES/24(9), 2023-05-06 - Regulation of thrombin activity by ligand-induced topological alteration in a thrombin-binding aptamer
Sasaki Shogo; Ma Yue; Hirokawa Takatsugu; Ikebukuro K...
CHEMICAL COMMUNICATIONS/59(57)/pp.8862-8865, 2023-07-13 - Differential Metabolic Stability of 4α,25- and 4β,25-Dihydroxyvitamin D3 and Identification of Their Metabolites
Mizumoto Yuka; Sakamoto Ryota; Iijima Kazuto; Nakaya ...
BIOMOLECULES/13(7), 2023-06-24 - AlphaFold version 2.0 elucidates the binding mechanism between VIPR2 and KS-133, and reveals an S-S bond (Cys(25)-Cys(192)) formation of functional significance for VIPR2
Sakamoto Kotaro; Asano Satoshi; Ago Yukio; Hirokawa T...
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS/636(1)/pp.10-16, 2022-12 - Attenuation of SARS-CoV-2 replication and associated inflammation by concomitant targeting of viral and host cap 2'-O-ribose methyltransferases
Bergant Valter; Yamada Shintaro; Grass Vincent; Tsukam...
EMBO JOURNAL/41(17), 2022-09 - Unfolding is the driving force for mitochondrial import and degradation of the Parkinson's disease-related protein DJ-1
Hirokawa Takatsugu; BB Queliconi; W Kojima; M Kimura; K ...
J Cell Sci./134(22)/p.jcs258653, 2021-11 - [In-Silico Drug Discovery Support-Current Situation and Challenges]
Hirokawa Takatsugu
Gan to kagaku ryoho. Cancer & chemotherapy/49(4)/pp.359-364, 2022-04-01 - Inverse Mixed-Solvent Molecular Dynamics for Visualization of the Residue Interaction Profile of Molecular Probes
Yanagisawa Keisuke; Yoshino Ryunosuke; Kudo Genki; Hiroka...
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES/23(9), 2022-04-26 - Chemosynthetic ethanolamine plasmalogen stimulates gonadotropin secretion from bovine gonadotrophs by acting as a potential GPR61 agonist
Kadokawa Hiroya; Yoshino Ryunosuke; Saito Risa; Hiroka...
ANIMAL REPRODUCTION SCIENCE/241, 2022-05-13 - Molecular action of larvicidal flavonoids on ecdysteroidogenic glutathione S-transferase Noppera-bo in Aedes aegypti
Inaba Kazue; Ebihara Kana; Senda Miki; Yoshino Ryunosuke...
BMC Biology/20(1)/p.43, 2022-02 - MDContactCom: a tool to identify differences of protein molecular dynamics from two MD simulation trajectories in terms of interresidue contacts
Motono Chie; Yanagida Shunsuke; Sato Miwa; Hirokawa Taka...
BIOINFORMATICS/38(1)/pp.273-274, 2022-01 - Evaluating cepharanthine analogues as natural drugs against SARS-CoV-2
Hijikata Atsushi; Shionyu-Mitsuyama Clara; Nakae Setsu...
FEBS OPEN BIO/12(1)/pp.285-294, 2022-01 - more...
- Crystal structure of Staphylococcus aureus lipase complex with unsaturated petroselinic acid