YE Xiucai

Researcher's full information

Articles

• Spatio-temporal epidemic forecasting using mobility data with LSTM networks and attention mechanism
  Jiao Shihu; Wang Yu; Ye Xiucai; Nagahara Larry; Sakur...
  Scientific Reports/15( 9603), 2025-03
• OmniClust: A versatile clustering toolkit for single-cell and spatial transcriptomics data
  Cui Yaxuan; Cui Yang; Ding Yi; Nakai Kenta; Wei Leyi...
  Methods/238/pp.84-94, 2025-03
• DRL-UPPS: User Trajectory Privacy Protection Strategy Based on Deep Reinforcement Learning in Mobile Crowdsensing
  He Ding; Zhang Jing; Xu Li; Liu Yanhua; Ye Xiucai
  IEEE TRANSACTIONS ON COMPUTATIONAL SOCIAL SYSTEMS, 2025-03-03
• MultiCycPermea: accurate and interpretable prediction of cyclic peptide permeability using a multimodal image-sequence model
  Wang Zixu; Chen Yangyang; Shang Yifan; Yang Xiulong; ...
  BMC Biology/23(63), 2025-02
• Image-based generation for molecule design with SketchMol
  Wang Zixu; Chen Yangyang; Ma Pengsen; Yu Zhou; Wang ...
  NATURE MACHINE INTELLIGENCE/Epub, 2025-02-13
• Robust feature learning using contractive autoencoders for multi-omics clustering in cancer subtyping
  Guo Mengke; Ye Xiucai; Huang Dong; Sakurai Tetsuya
  METHODS/233/pp.52-60, 2025-01
• Integrating Biological Language Processing and Memory Attention Model for Protein-DNA Binding Residue Prediction
  Guan Shixuan; Ye Xiucai; Sakurai Tetsuya
  Proceedings of IEEE International Conference on Bioinformatics and Biomedicine (BIBM)/pp.25-30, 2024-12
• Selecting interpretable features for cancer subtyping on multi-omics data
  Shi Tianyi; Ye Xiucai; Huang Dong; Sakurai Tetsuya
  Proceedings of IEEE International Conference on Bioinformatics and Biomedicine (BIBM)/pp.1155-1160, 2024-12
• Lightweight privacy-preserving authenticated key agreements using physically unclonable functions for internet of drones
  Lee Tian-Fu; Ye Xiucai; Huang Wei-Jie
  JOURNAL OF INFORMATION SECURITY AND APPLICATIONS/87, 2024-12
• Cancer subtype identification by multi-omics clustering based on interpretable feature and latent subspace learning
  Shi Tianyi; Ye Xiucai; Huang Dong; Sakurai Tetsuya
  METHODS/231/pp.144-153, 2024-11
• DTS-AdapSTNet: an adaptive spatiotemporal neural networks for traffic prediction with multi-graph fusion
  Shi Wenlong; Zhang Jing; Zhong Xiangxuan; Chen Xiaopi...
  PEERJ COMPUTER SCIENCE/10, 2024-11-29
• PCDP-CRLPPM: a classified regional location privacy-protection model based on personalized clustering with differential privacy in data management
  Shi Wenlong; Zhang Jing; Chen Xiaoping; Ye Xiucai
  The Computer Journal/68(4)/pp.372-396, 2024-11
• An interpretable deep learning model predicts RNA-small molecule binding sites
  Xi Wenyu; Wang Ruheng; Wang Li; Ye Xiucai; Liu Mingy...
  FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE/159/pp.557-566, 2024-10
• Identification of Spatial Domains, Spatially Variable Genes, and Genetic Association Studies of Alzheimer Disease with an Autoencoder-based Fuzzy Clustering Algorithm
  Cui Yaxuan; Wei Leyi; Wang Ruheng; Ye Xiucai; Sakurai...
  CURRENT BIOINFORMATICS/19(8)/pp.765-776, 2024-10
• DiffSeqMol: A Non-Autoregressive Diffusion-Based Approach for Molecular Sequence Generation and Optimization
  Wang Zixu; Chen Yangyang; Guo Xiulan; Li Yayang; Li ...
  CURRENT BIOINFORMATICS/Epub, 2024-09-20
• Mapping autophagy-related membrane contact site proteins and complexes with AutoMCS Navigator
  Liu Tianyuan; Pan Xianrun; Ren Liping; Ye Xiucai; Zhe...
  AUTOPHAGY/Epub, 2024-08-27
• Stitch-Able Split Learning Assisted Multi-UAV Systems
  Sun Tingkai; Wang Xiaoyan; Ye Xiucai; Han Biao
  IEEE OPEN JOURNAL OF THE COMPUTER SOCIETY/5/pp.418-429, 2024-08-22
• IEA-DP: Information Entropy-driven Adaptive Differential Privacy Protection Scheme for social networks
  Zhang Jing; Si Kunliang; Zeng Zuanyang; Li Tongxin; Y...
  JOURNAL OF SUPERCOMPUTING/80(14)/pp.20546-20582, 2024-06
• CyclePermea: Membrane Permeability Prediction of Cyclic Peptides with a Multi-Loss Fusion Network
  Wang Zixu; Chen Yangyang; Ye Xiucai; Sakurai Tetsuya
  Proceedings of the International Joint Conference on Neural Networks (IJCNN), 2024-06
• Deciphering the Complex Characterization of Coding LncRNA
  Liu Tianyuan; Ye Xiucai; Sakurai Tetsuya
  Proceedings of the International Joint Conference on Neural Networks (IJCNN), 2024-06
• Integrated convolution and self-attention for improving peptide toxicity prediction
  Jiao Shihu; Ye Xiucai; Sakurai Tetsuya; Zou Quan; Liu...
  BIOINFORMATICS/40(5)/p.btae297, 2024-05
• GeoPM-DMEIRL: A deep inverse reinforcement learning security trajectory generation framework with serverless computing
  Huang Yirui; Zhang Jing; Hou Hongming; Ye Xiucai; Che...
  FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE/154/pp.123-139, 2024-05
• CodLncScape Provides a Self-Enriching Framework for the Systematic Collection and Exploration of Coding LncRNAs
  Liu Tianyuan; Qiao Huiyuan; Wang Zixu; Yang Xinyan; P...
  Advanced Science/11(22), 2024-04
• A BERT-based model for the prediction of lncRNA subcellular localization in Homo sapiens
  Zhang Zhaoyue; Zhang Zheng; Ye Xiucai; Sakurai Tetsuy...
  INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES/265(1)/p.130659, 2024-04
• Multi-party collaborative drug discovery via federated learning
  Dong Huang; Ye Xiucai; Sakurai Tetsuya
  Computers in Biology and Medicine/171/p.108181, 2024-03
• more...