稲垣 祐司(イナガキ ユウジ)
- 論文
- Plastid genome-based phylogeny pinpointed the origin of the green-colored plastid in the dinoflagellate Lepidodinium chlorophorum.
Ryoma Kamikawa; Goro Tanifuji; Masanobu Kawachi; Hideaki Miy...
Genome Biology and Evolution/7(4)/pp.1133-1140, 2015-04 - Multiple losses of photosynthesis in Nitzschia (Bachillariophyceae).
Ryoma Kamikawa; Naoji Yubuki; Masaki Yoshida; Misato Taira; N...
Phycological Research/63(1)/pp.19-28, 2015-01 - Unique genome evolution in an intracellular N2-fixing symbiont of a rhopalodiacean diatom
Nakayama Takuro; Inagaki Yuji
Acta Societatis Botanicorum Poloniae/83(4)/pp.409-413, 2014-12 - Non-Homogeneous置換モデルに基づく進化系統樹推測のMPI/OpenMP HYBRID並列化: 大規模計算システム向けプログラムの開発と性能評価
石川 奏太; 中尾 昌広; 稲垣 祐司; 橋本 哲男; 佐藤 三久
情報処理学会論文誌. コンピューティングシステム/7(3)/pp.13-24, 2014-08 - Complete genome of a nonphotosynthetic cyanobacterium in a diatom reveals recent adaptations to an intracellular lifstyle
Nakayama Takuro; Ryoma Kamikawa; Goro Tanifuji; Yuichiro ...
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA/111(31)/pp.11407-11412, 2014-08 - Secondary loss of a cis-spliced intron after the diversification of Giardia intestinalis assemblages.
Kamikawa Ryoma; Inagaki Yuji; Hashimoto Tetsuo
BMC Research Notes/7/p.413, 2014-06 - An intronic open reading frame was released from one of group II introns in the mitochondrial genome of the haptophyte Chrysochromulina sp. NIES-1333
Nishimura Yuki; Kamikawa Ryoma; Hashimoto Tetsuo; Inagaki Yuji
Mobile Genetic Elements/4, 2014-05 - Palpitomonas bilix represents a basal cryptist lineage: Insight into the character evolution in Cryptista
Yabuki Akinori; Kamikawa Ryoma; Ishikawa Sota; Kolisko M...
Scientifc Reports/4/p.4641, 2014-04 - Gene content evolution in discobid mitochondria deduced from the phylogenetic position and complete mitochondrial genome of Tsukubamonas globosa.
Kamikawa Ryoma; Kolisko Martin; Nishimura Yuki; Yabuki Akino...
Genome Biology and Evolution/6(2)/pp.306-315, 2014-01 - Parallel re-modeling of EF-1α function in eukaryotic evolution: Divergent, low-expressed EF-1α genes co-occur with EFL genes in diverse distantly related eukaryotes.
Ryoma Kamikawa; Matthew W Brown; Yuki Nishimura; Yoshihiko S...
BMC Evolutionary Biology/13/p.131, 2013-06 - Identificatio of a bacteria-like ferrochelatase gene in Strongyloides venezuelensis, an animal parasitic nematode.
Nagayasu E; Ishikawa S; Taketani S; Ooka T; Chakraborty ...
PLoS One/8(3)/p.e58458, 2013 - Prasinoxanthin is absent in the green-colored dinoflagellate Lepidodinium chlorophorum strain NIES-1868: Pigment composition and 18S rRNA phylogeny.
Matsumoto T; Kawachi M; Miyashita H; Inagaki Y.
Journal of Plant Research/125(6)/pp.705-711, 2012-11 - Evolution of Elongation Factor-Like (EFL) Protein in Rhizaria is Revised by Radiolarian EFL Gene Sequences
Ishitani Yoshiyuki; Kamikawa Ryoma; Yabuki Akinori; Tsuch...
JOURNAL OF EUKARYOTIC MICROBIOLOGY/59(4)/pp.367-373, 2012-07 - RY-coding and non-homogeneous models can ameliorate the maximum-likelihood inferences from nucleotide sequence data with parallel compositional heterogeneity
Ishikawa Sohta A.; Inagaki Yuji; Hashimoto Tetsuo
EVOLUTIONARY BIOINFORMATICS/8/pp.357-371, 2012-06 - Separate Origins of Group I Introns in Two Mitochondrial Genes of the Katablepharid Leucocryptos marina
Nishimura Yuki; Kamikawa Ryoma; Hashimoto Tetsuo; Inagaki...
PLOS ONE/7(5)/p.e37307, 2012-05 - Multigene phylogenies of diverse Carpediemonas-like organisms identify the closest relatives of 'amitochndriate' diplomonads and retortamonads
Takishita K*; Kolisko M*; Komatsuzaki H; Yabuki A; Inagaki Y; ...
Protist/16(3)/p.344-355, 2012-02 - An asynchronous parallel genetic algorithm for the maximum likelihood phylogenetic tree search.
Tsuji M; Sato M; Tanabe AS; Inagaki Y; Hashimoto T.
Proceedings of 2012 IEEE Congress on Evolutionary Computation (CEC)/2012/pp.1-8, 2012-01 - Separate origins of group I introns in two mitochondrial genes of the katablepharid Leucocryptos marina
Nishimura Y*; Kamikawa R*; Hashimoto T; Inagaki Y
PLoS One/7(5)/p.e37307, 2012-01 - Multigene phylogenetic analyses including diverse radiolarian species support the "Retaria" hypothesis - The sister relationship of Radiolaria and Foraminifera
Ishitani Yoshiyuki; Ishikawa Sohta A.; Inagaki Yuji; Tsuc...
MARINE MICROPALEONTOLOGY/81(1-2)/pp.32-42, 2011-11 - Tsukubamonas globosa n. gen., n. sp., a novel excavate flagellate possibly holding a key for the early evolution in "Discoba"
Yabuki Akinori; Nakayama Takeshi; Yubuki Naoji; Hashimoto...
JOURNAL OF EUKARYOTIC MICROBIOLOGY/58(4)/pp.319-331, 2011-07 - A deviant genetic code in the green alga-derived plastid in the dinoflagellate Lepidodinium chlorophorum
Matsumoto Takuya; Ishikawa Sohta A.; Hashimoto Tetsuo; In...
MOLECULAR PHYLOGENETICS AND EVOLUTION/60(1)/pp.68-72, 2011-07 - Splintrons in Giardia intestinalis: Spliceosomal introns in a split form
Kamikawa R; Inagaki Y; Roger AJ; Hashimoto T
Communicative and Integrative Biology/4(4)/p.454-456, 2011-04 - Green-colored plastids in the dinoflagellate genus Lepidodinium are of core chlorophyte origin
Matsumoto Takuya; Shinozaki Fumihiko; Chikuni Tomoko; Yab...
PROTIST/162(2)/pp.268-276, 2011-04 - Split introns in the genome of Giardia intestinalis are excised by spliceosome-mediated trans-splicing
Kamikawa Ryoma; Inagaki Yuji; Tokoro Masaharu; Roger And...
CURRENT BIOLOGY/21(4)/pp.311-315, 2011-02 - A novel spliceosome-mediated trans-splicing can change our view on genome complexity of the divergent eukaryote Giardia intestinalis
Kamikawa R; Inagaki Y; Hashimoto T
Biophysical Reviews/3(4)/pp.193-197, 2011-01 - さらに表示...
- Plastid genome-based phylogeny pinpointed the origin of the green-colored plastid in the dinoflagellate Lepidodinium chlorophorum.