稲垣 祐司(イナガキ ユウジ)

研究者情報全体を表示

論文
  • Proposal of Pseudochattonella verruculosa gen. nov., comb. nov. (Dictyochophyceae) for a former raphidophycean Chattonella verruculosa, based on 18S rDNA phylogeny and ultrastructural characteristics.
    Hosoi-Tanabe S; Honda D; Fukaya S; Otake I; Inagaki Y; Sa...
    Phycological Research/55(3)/p.185-192, 2007-09
  • ロングブランチの誘惑-分子系統解析のダークサイド
    稲垣 祐司
    藻類/55(2)/pp.111-116, 2007-07
  • Diversity of microbial eukaryotes in sediment at a deep-sea methane cold seep: surveys of ribosomal DNA libraries from raw sediment samples and two enrichment cultures
    Takishita Kiyotaka; Yubuki Naoji; Kakizoe Natsuki; Inagak...
    EXTREMOPHILES/11(4)/pp.563-576, 2007-07
  • Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages
    Patron Nicola J.; Inagaki Yuji; Keeling Patrick J.
    CURRENT BIOLOGY/17(10)/pp.887-891, 2007-05
  • Fragmentation of mitochondrial large subuint rRNA in a dinoflagellate Alexandrium catenella and the evolution of rRNA structure in alveolate mitochondria.
    Kamikawa R; Inagaki Y; Sako Y.
    Protist/158(2)/p.239-245, 2007-04
  • Ultrastructure and ribosomal RNA phylogeny of the free-living heterotrophic flagellate Dysnectes brevis n. gen., n. sp., a new member of the fornicata
    Yubuki Naoji; Inagaki Yuji; Nakayama Takeshi; Inoue Isao
    JOURNAL OF EUKARYOTIC MICROBIOLOGY/54(2)/pp.191-200, 2007-03
  • Plasticity of the domain structure in FlgJ, a bacterial protein involved in flagellar rod formation
    Nambu Takayuki; Inagaki Yuji; Kutsukake Kazuhiro
    GENES & GENETIC SYSTEMS/81(6)/pp.381-389, 2006-12
  • Phylogenetic estimation under codon models can be biased by codon usage heterogeneity
    Inagaki Yuji; Roger Andrew
    MOLECULAR PHYLOGENETICS AND EVOLUTION/40(2)/pp.428-434, 2006-08
  • Comprehensive multigene phylogenies of excavate protists reveal the evolutionary positions of "primitive" eukaryotes
    Simpson AGB; Inagaki Y; Roger AJ
    MOLECULAR BIOLOGY AND EVOLUTION/23(3)/pp.615-625, 2006-03
  • Recombination between elongation factor 1 alpha genes from distantly related archaeal lineages
    Inagaki Y; Susko E; Roger AJ
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA/103(12)/pp.4528-4533, 2006-03
  • A close relationship between Cercozoa and Foraminifera supported by phylogenetic analyses based on combined amino acid sequences of three cytoskeletal proteins (actin, alpha-tubulin, and beta-tubulin)
    Takishita K; Inagaki Y; Tsuchiya M; Sakaguchi M; Maruyama T
    GENE/362/pp.153-160, 2005-12
  • The evolutionary relationships amongst excavates: a concatenated protein analysis.
    Simpson AGB; Inagaki Y; Roger AJ.
    Journal of Eukaryotic Microbiology/52/p.7S-27S, 2005-01
  • Capsaspora owczarzaki is an independent opisthokont lineage.
    Ruiz-Trillo I; Inagaki Y; Davis LA; Sperstad S; Landfald ...
    Current Biology/14(22)/p.R946-R947, 2004-11
  • A class of eukaryotic GTPase with a punctuate distribution suggesting multiple functional replacements of translation elongation factor 1α.
    Keeling PJ; Inagaki Y.
    Proceedings of the National Academy of Sciences USA/101(43)/p.15380-15385, 2004-10
  • On inconsistency of the neighbor-joining, least-squares, and minimum evolution estimation when substitution processes are incorrectly modeled.
    Susko E; Inagaki Y; Roger AJ.
    Molecular Biology and Evolution/21(9)/p.1629-1642, 2004-09
  • Phylogenetic artifacts can be caused by leucine, serine and arginine codon usage heterogeneity: dinoflagellate plastid origins as a case study.
    Inagaki Y; Simpson AGB; Dacks JB; Roger AJ.
    Systematic Biology/53(4)/p.582-593, 2004-08
  • Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1α phylogenies.
    Inagaki Y; Susko E; Fast NM; Roger AJ.
    Molecular Biology and Evolution/21(7)/p.1340-1349, 2004-07
  • Assessing functional divergence in EF-1α and its paralogs in eukaryotes and archaebacteria.
    Inagaki Y; Blouin C; Susko E; Roger AJ.
    Nucleic Acids Research/31(14)/p.4227-4237, 2003-07
  • Testing for differences in rates-across-sites distributions in phylogenetic subtrees.
    Susko E; Inagaki Y; Field C; Holder ME; Roger AJ.
    Molecular Biology and Evolution/19(9)/p.1514-1523, 2002-09
  • Lateral transfer of an EF-1α gene: origin and evolution of the large subunit of ATP sulfurylase in Eubacteria.
    Inagaki Y; Doolittle WF; Baldauf SL; Roger AJ.
    Current Biology/12(9)/p.774-776, 2002-04
  • Convergence and constraint in eukaryotic release factor 1 domain 1: the evolution of stop codon specificity.
    Inagaki Y; Blouin C; Doolittle WF; Roger AJ.
    Nucleic Acids Research/30(2)/p.532-544, 2002-01
  • Class I release factors in ciliates with variant genetic codes.
    Inagaki Y; Doolittle WF.
    Nucleic Acids Research/29(4)/p.921-927, 2001-02
  • Evolutionary relationship between dinoflagellates bearing obligate diatom endosymbionts: insight into tertiary endosymbiosis.
    Inagaki Y; Dacks JB; Doolittle WF; Watanabe KI; Ohama T.
    International Journal of Systematics and Evolutionary Microbiology/50(6)/p.2075-2081, 2000-11
  • Evolution of the eukaryotic translation termination system: origins of release factors.
    Inagaki Y; Doolittle WF.
    Molecular Biology and Evolution/17(6)/p.882-889, 2000-06
  • Phylogenetic analysis of diatom coxI genes and implications of a fluctuating GC content on mitochondrial genetic code evolution.
    Ehara M; Inagaki Y; Watanabe KI; Ohama T.
    Current Genetics/37(1)/p.29-33, 2000-01
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