YING BEIWEN
- Affiliation
- Faculty of Life and Environmental Sciences
- Official title
- Associate Professor
- Sex
- Female
- URL
- Phone
- 029-853-6633
- Fax
- 029-853-6633
- Research fields
System genome science Evolutionary biology Ecology/Environment Computational science Life / Health / Medical informatics - Research keywords
Bacterial growth Genome reduction Experimental evolution Gene expression Cell culture Machine learning Bioinformatics - Research projects
細胞培養のデータ駆動型最適化の基盤技術の開発 2021 -- 2023 YING BEIWEN Japan Society for the Promotion of Science/Grant-in-Aid for Challenging Research (Exploratory) 6,370,000Yen ラクトバチルス菌検査キットの培養速度の向上 2021 -- 2022 BEIWEN YING 民間企業/共同研究 5,280,000Yen 細胞培養(培地)の最適化プラットフォームの開発 2020 -- 2021 YING BEIWEN 文部科学省 (つくばグローバル・イノベーション推進機構)/地域イノベーション・エコシステム形成プログラム 3,520,000Yen ゲノム縮小と増殖速度の相関の機構解明 2019 -- 2022 YING BEIWEN Japan Society for the Promotion of Science/Grant-in-Aid for Scientific Research(B) 13,650,000Yen 人工的遺伝子回路の発現レベルの予測モデルの構築 2014 -- 2015 YING BEIWEN Japan Society for the Promotion of Science/新学術領域研究(研究領域提案型) 4,420,000Yen 極限貧栄養環境下で増殖する細胞の創出 2014 -- 2016 YING BEIWEN Japan Society for the Promotion of Science/基盤研究(C) 5,070,000Yen 大腸菌の確率的環境適応応答の解析 2014-04 -- 2015-03 イン ベイウェン 科学技術振興機構(JST)/共同研究 細胞増殖に伴う集団秩序の維持 2013-04 -- 2015-03 YING BEIWEN Japan Society of for the Promotion of Science/Grant-in-Aid for Scientific Research on Innovative Areas 大腸菌ゲノム高温適応進化機構の解明 2011-04 -- 2014-03 YOMO Tetsuya Japan Society of for the Promotion of Science/Grant-in-Aid for Scientific Research (A) 単細胞を用いた細胞分化の恒常性モデルの構築 2010-04 -- 2012-03 YING BEIWEN Japan Society of for the Promotion of Science/Grant-in-Aid for Exploratory Research more... - Career history
2013 -- (current) University of TsukubaAssociate Professor 2007 -- 2013 Osaka UniversityAssistant Professor, Associate Professor 2006 -- 2007 Centre national de la recherche scientifique (CNRS)Postdoc 2005 -- 2006 The University of TokyoResearch Fellow - Academic background
2000 -- 2005 The University of Tokyo Graduate School of Integrative Sciences - Degree
2005-03 PhD. (Biosciences) The University of Tokyo - Academic societies
2018 -- (current) JAPAN SOCIETY FOR BIOSCIENCE, BIOTECHNOLOGY, AND AGROCHEMISTRY 2017 -- (current) American Society for Microbiolgy 2015 -- (current) JAPANESE SOCIETY OF MICROBICAL ECOLOGY 2007 -- (current) Society of Genome Microbiolgy, Japan - Articles
- Machine learning-assisted discovery of growth decision elements by relating bacterial population dynamics to environmental diversity.
AIDA honoka; HASHIZUME Takamasa; ASHINO Kazuha; YING BEIWEN
bioRxiv, 2022-02 - Primordial mimicry induces morphological change in Escherichia coli
Lu Hui; Aida honoka; KUROKAWA Masaomi; Chen Feng; Xia Ya...
Commun Biol/5(1), 2022-01 - Experimental evolution expands the breadth of adaptation to an environmental gradient correlated with genome reduction.
KUROKAWA Masaomi; NISHIMURA Issei; YING BEIWEN
Front Microbiol, 2022-01 - Local adaptation mediated niche expansion in correlation with genetic richness
KUROKAWA Masaomi; NISHIMURA Issei; YING BEIWEN
bioRxiv, 2021-11 - Correlation between the spatial distribution and colony size was common for monogenetic bacteria in laboratory conditions.
XUE Heng; KUROKAWA Masaomi; YING BEIWEN
BMC Microbiol/21, 2021-04 - Correlation between the spatial distribution and colony size was common for monogenetic bacteria in laboratory conditions
XUE Heng; KUROKAWA Masaomi; YING BEIWEN
Research Square, 2020-11 - The highly conserved chromosomal periodicity of transcriptomes and the correlation of its amplitude with the growth rate in Escherichia coli
Nagai Motoki; Kurokawa Masaomi; Ying Bei-Wen
DNA research/27(3), 2020-08 - Correlated chromosomal periodicities according to the growth rate and gene expression
LIU Liu; KUROKAWA Masaomi; NAGAI Motoki; SENO Shigeto; YI...
SCIENTIFIC REPORTS/10(1), 2020-09 - The common chromosomal periodicity of transcriptomes is correlated with the bacterial growth rate
NAGAI Motoki; KUROKAWA Masaomi; YING BEIWEN
bioRxiv, 2020-05 - Experimental challenges in the origin and post-origin of life
XIA Yang; YING BEIWEN; HANCZYC Martin; YOMO Tetsuya
Journal of Systems Chemistry, 2020-06 - Clustering of Bacterial Growth Dynamics in Response to Growth Media by Dynamic Time Warping
CAO Yang-Yang; YOMO Tetsuya; YING BEIWEN
Microorganisms/8(3), 2020-03 - Experimental Challenges for Reduced Genomes: The Cell Model Escherichia coli
KUROKAWA Masaomi; YING BEIWEN
Microorganisms/8(1), 2019-12 - Predicting the decision making chemicals used for bacterial growth.
ASHINO Kazuha; SUGANO Kenta; AMAGASA Toshiyuki; YING BEIWEN
SCIENTIFIC REPORTS/9, 2019-05 - Gene expression order attributed to genome reduction and the steady cellular state in Escherichia coli
YING BEIWEN; YAMA Kazuma
Front Microbiol/9, 2018-09 - A decay effect of the growth rate associated with genome reduction in Escherichia coli
TSUCHIYA Kouhei; CAO Yang-Yang; KUROKAWA Masaomi; ASHINO ...
BMC Microbiol/18, 2018-09 - Growth data of the E. coli strains carrying the reduced genomes
KUROKAWA Masaomi; YING BEIWEN
figshare. Dataset., 2018-04 - A decay effect of bacterial growth rate associated with genome reduction
TSUCHIYA Kouhei; CAO Yang-Yang; KUROKAWA Masaomi; ASHINO ...
bioRxiv, 2018-04 - Mutation accumulation under UV radiation in Escherichia coli
Shibai Atsushi; Takahashi Yusuke; Ishizawa Yuka; Motooka ...
Scientific Reports/7(1)/p.14531, 2017-11 - Precise, High-throughput Analysis of Bacterial Growth
Kurokawa Masaomi; Ying Bei-Wen
Journal of visualized experiments : JoVE/(127), 2017-09 - Coordinated Changes in Mutation and Growth Rates Induced by Genome Reduction.
NISHIMURA Issei; KUROKAWA Masaomi; LIU Liu; YING BEIWEN
MBIO/8(4), 2017-07 - A simple comparison of the extrinsic noise in gene expression between native and foreign regulations in Escherichia coli
Ying Bei-Wen; Seno Shigeto; Matsuda Hideo; Yomo Tetsuya
Biochemical and biophysical research communications/486(3)/pp.852-857, 2017-03 - Correlation between genome reduction and bacterial growth.
KUROKAWA Masaomi; SENO Shigeto; MATSUDA Hideo; YING BEIWEN
DNA Research/23(6)/pp.517-525, 2016-12 - The Escherichia coli transcriptome linked to growth fitness
YING BEIWEN; YAMA Kazuma; KITAHARA Kazuki; YOMO Tetsuya
Genomics Data/7/pp.1-3, 2016-01 - Functional specialization in regulation and quality control in thermal adaptive evolution
Yama Kazuma; Matsumoto Yuki; Murakami Yoshie; Seno Shigeto; M...
GENES TO CELLS/20(11)/pp.943-955, 2015-11 - Bacterial transcriptome reorganization in thermal adaptive evolution.
YING BEIWEN; Matsumoto Yuki; KITAHARA Kazuki; SUZUKI Shing...
BMC Genomics/16, 2015-10 - more...
- Machine learning-assisted discovery of growth decision elements by relating bacterial population dynamics to environmental diversity.
- Books
- Comparative analyses of bacterial transcriptome reorganisation in response to temperature increase.
YING BEIWEN; YOMO Tetsuya
Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria, 2016-05 - Built-in synthetic gene circuits in Escherichia coli – methodology and applications.
YING BEIWEN; YOMO Tetsuya
Advances in Applied Biotechnology, 2012-01 - Protein generation using a reconstituted system.
YING BEIWEN; UEDA Takuya
Protein Engineering Handbook, 2009-01 - The PURE system: a minimal cell-free translation system.
YING BEIWEN; SHIMIZU Yoshihiro; UEDA Takuya
Cell-Free Expression, 2007-12
- Comparative analyses of bacterial transcriptome reorganisation in response to temperature increase.
- Conference, etc.
- 機械学習による微⽣物増殖の予測
橋詰 崇雅; 會田 穂乃香; YING BEIWEN
日本ゲノム微生物学会第16回大会/2022-03-02--2022-03-04 - 大腸菌コロニー形成の空間分布の法則
人見 健矢; 翁 杰瑞翌; YING BEIWEN
日本ゲノム微生物学会第16回大会/2022-03-02--2022-03-04 - 大腸菌増殖を決定する環境因子の網羅的探索
會田 穂乃香; 橋詰 崇雅; YING BEIWEN
日本ゲノム微生物学会第16回大会/2022-03-02--2022-03-04 - 微生物集団増殖に優位的に影響する環境因子の探索
會田 穂乃香; 橋詰 崇雅; YING BEIWEN
日本微生物生態学会第34回大会/2021-10-30--2021-11-2 - 大腸菌コロニー形成の空間分布の解析
人見 健矢; YING BEIWEN
日本微生物生態学会第34回大会/2021-10-30--2021-11-2 - 大腸菌ゲノム縮小に伴う変異率と増殖速度の協調的変化
黒川 真臣; 西村 一成; YING BEIWEN
日本ゲノム微生物学会第15回大会/2021-03-04--2021-03-06 - 大腸菌遺伝子発現のゲノム周期性と増殖速度の相関
永井 元基; 黒川 真臣; YING BEIWEN
日本ゲノム微生物学会第15回大会/2021-03-04--2021-03-06 - 大腸菌コロニー形成パターンの解析
XUE Heng; YING BEIWEN
日本微生物生態学会第33回大会/2019-09-10--2019-09-13 - 遺伝子発現のゲノム周期性に関する検証
永井 元基; 黒川 真臣; YING BEIWEN
日本ゲノム微生物学会第14回大会/2020-03-06--2020-03-08 - 大腸菌ゲノム縮小株ライブラリーの網羅的実験進化
黒川 真臣; 永井 元基; 瀬尾 茂人; 小椋 義俊; 林 哲也; YING BEIWEN
日本ゲノム微生物学会第14回大会/2020-03-06--2020-03-08 - 微生物培養のデータ駆動型最適化
YING BEIWEN; 會田 穂乃香; 内田 圭祐; 芦野 一葉; 天笠 俊之
日本ゲノム微生物学会第14回大会/2020-03-06--2020-03-08 - 機械学習を用いた集団増殖における環境因子の貢献度分析
YING BEIWEN
Future Trend in Polymer Science 2018 (FTiPS2018)/2019-03-20--2019-03-20 - 大腸菌増殖における培地成分の寄与度の学習分析
YING BEIWEN; 芦野一葉; 菅野健太; 天笠俊之
日本農芸化学会2019年東京大会/2019-03-24--2019-03-24 - 微生物の物質生産に適した化学環境条件の網羅的探索
内田圭裕; 桝尾俊介; 高谷直樹; YING BEIWEN
超異分野学会2019/2019-03-08--2019-03-08 - 大腸菌の増殖を決定する環境要因の判定と予測
芦野一葉; 菅野健太; 天笠 俊之; YING BEIWEN
日本ゲノム微生物学会第13回大会/2019-03-07--2019-03-07 - 変異による適応度貢献のゲノム縮小に伴う増加
黒川真臣; YING BEIWEN
日本ゲノム微生物学会第13回大会/2019-03-06--2019-03-06 - A challenge of predicting the contribution of chemicals to bacterial growth by machine learning
YING BEIWEN; 芦野一葉; 菅野健太; 天笠俊之
日本分子生物学会第41回大会/2018-11-28--2018-11-30 - 大腸菌における非必須遺伝子と増殖速度の関係
劉柳; YING BEIWEN
日本ゲノム微生物学会第12回大会/2018-03-05--2018-03-07 - ゲノム縮小と大腸菌増殖の相関
黒川真臣; YING BEIWEN
日本ゲノム微生物学会第12回大会/2018-03-05--2018-03-07 - ヒスチジン枯渇環境に適応した大腸菌に対する解析
日原奨希; YING BEIWEN
日本ゲノム微生物学会第12回大会/2018-03-05--2018-03-07 - 大腸菌広域欠失株の増殖に対する数理的評価
黒川真臣; YING BEIWEN
日本ゲノム微生物学会第10回大会/2016-03-04 - ヒスチジン枯渇を長期間経験したヒスチジン要求性大腸菌株に対する解析
日原奨希; YING BEIWEN
日本ゲノム微生物学会第11回大会/2017-03-02--2017-03-04 - 大腸菌ゲノム縮小株の増殖に対する研究
黒川真臣; YING BEIWEN
日本ゲノム微生物学会第11回大会/2017-03-02--2017-03-04 - 大腸菌ゲノム縮小における増殖速度と変異率の相関
YING BEIWEN
日本ゲノム微生物学会第11回大会/2017-03-02--2017-03-04 - Connecting bacterial growth with genome and transcriptome.
YING BEIWEN
International workshop on "Integration of Synthetic Biology and Systems Biology of Microbes"/2016-03-17 - more...
- 機械学習による微⽣物増殖の予測
- Intellectural property rights
- 培養環境判定システム、培養装置、要求取得装置及びプログラム
YING BEIWEN; AIDA Honoka; HASHIZUME Takamasa - 微生物培養用合成培地及び微生物の培養方法
YING BEIWEN; AIDA Honoka - 培養環境判定装置、培養システム、培養環境判定方法、培養方法、及びプログラム
YING BEIWEN; AMAGASA Toshiyuki - 培養環境判定装置、培養環境判定方法、及びプログラム
YING BEIWEN; Amagasa Toshiyuki - リボソームディスプレイ
UEDA Takuya; OHASHI Hiroyuki; SHIMIZU Yoshihiro; YING BEIWEN...
- 培養環境判定システム、培養装置、要求取得装置及びプログラム
- Teaching
2021-10 -- 2022-02 Internship on Integrative Environment and Biomass Sciences University of Tsukuba. 2021-04 -- 2021-08 Internship on Integrative Environment and Biomass Sciences University of Tsukuba. 2021-10 -- 2022-02 Seminar on Integrative Environment and Biomass Sciences D University of Tsukuba. 2021-04 -- 2021-08 Seminar on Integrative Environment and Biomass Sciences D University of Tsukuba. 2021-10 -- 2022-02 Methodology on Environmental Molecular Microbiology University of Tsukuba. 2021-04 -- 2021-08 Methodology on Environmental Molecular Microbiology University of Tsukuba. 2021-07 -- 2021-08 Introduction to Environmental Plant and Microbe Molecular Biology University of Tsukuba. 2021-04 -- 2021-08 Seminar on Integrative Environment and Biomass Sciences A University of Tsukuba. 2021-10 -- 2022-02 Seminar on Integrative Environment and Biomass Sciences A University of Tsukuba. 2021-10 -- 2022-02 Dissertation in Ecological Molecular Microbiology II University of Tsukuba. more... - Other educational activities
2017-04 -- 2017-04 キャリアデザインワークショップ 東京大学 - Talks
- Experimental evolution with laboratory E. coli strains
YING BEIWEN
華東理工大学 セミナー/2017-03-20 - Stochastic Adaptation and Thermal Adaptive Evolution
YING BEIWEN
中国農業大学 セミナー/2011-11-01 - 実験室内進化からみた大腸菌の高温適応進化
YING BEIWEN
「酵母リソース工学」開設式・記念講演会/2011-11-29
- Experimental evolution with laboratory E. coli strains
- Professional activities
2020 -- (current) BMC Microbiology Editorial Board Member 2019 -- (current) Scientific Reports (Nature Publishing Group) Editorial Board Member 2018 -- (current) Frontiers in Microbiology Review Editor 2015 -- (current) Society of Genome Microbiolgy, Japan Councilor - University Management
2022-04 -- (current) 入試委員会(学位プログラム) 委員 2019-04 -- (current) 教務委員会(学位プログラム) 委員 2017-04 -- (current) ダイバーシティ・アクセシビリティ(専攻) 2015-04 -- (current) 学生支援(専攻) 委員
(Last updated: 2022-06-03)